Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22332 | 3' | -53 | NC_005045.1 | + | 41919 | 0.66 | 0.789707 |
Target: 5'- ----aGCUcgUCGAGGUgugCGACCAGCUCa -3' miRNA: 3'- ccaacCGGa-AGUUCCA---GUUGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 41404 | 0.7 | 0.55696 |
Target: 5'- ---cGGCCUgaccuUCuaccAGGUauGCCAGCCCg -3' miRNA: 3'- ccaaCCGGA-----AGu---UCCAguUGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 40595 | 0.67 | 0.70397 |
Target: 5'- ---aGGCCggCGAGGgCAGCC-GCCa -3' miRNA: 3'- ccaaCCGGaaGUUCCaGUUGGuCGGg -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 39390 | 0.67 | 0.726108 |
Target: 5'- ---aGGUCUucuUCGuuguagcgcugcGGGUCAGCC-GCCCa -3' miRNA: 3'- ccaaCCGGA---AGU------------UCCAGUUGGuCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 39249 | 0.72 | 0.439659 |
Target: 5'- ---cGcGCCUgcucgucCAGGGUCGggaACCGGCCCg -3' miRNA: 3'- ccaaC-CGGAa------GUUCCAGU---UGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 39051 | 0.67 | 0.726108 |
Target: 5'- --gUGGUCUcgaugucgUCAGGGaUCAGgaugUCAGCCCg -3' miRNA: 3'- ccaACCGGA--------AGUUCC-AGUU----GGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 34850 | 0.68 | 0.670233 |
Target: 5'- aGGUUGGCgUUCAugcGGGauuGCCAGUUa -3' miRNA: 3'- -CCAACCGgAAGU---UCCaguUGGUCGGg -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 33984 | 0.67 | 0.692783 |
Target: 5'- --aUGGCCUgugCGAuGGuaUCGGCguCAGCCCg -3' miRNA: 3'- ccaACCGGAa--GUU-CC--AGUUG--GUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 32410 | 0.66 | 0.758529 |
Target: 5'- ---cGGCCUccUCGGcGGUCAuggcuacuucuGgCAGCCCu -3' miRNA: 3'- ccaaCCGGA--AGUU-CCAGU-----------UgGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 31306 | 0.69 | 0.613387 |
Target: 5'- cGGUaUGGCCUUCcagauGGG-CGaaggGCguGCCCg -3' miRNA: 3'- -CCA-ACCGGAAGu----UCCaGU----UGguCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 29552 | 0.66 | 0.747843 |
Target: 5'- aGGUaGGCaugcagUUCcuGG-CGGCCAGCCUg -3' miRNA: 3'- -CCAaCCGg-----AAGuuCCaGUUGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 29438 | 0.7 | 0.534776 |
Target: 5'- cGGgcGGCCU----GGUCGauggACCAGUCCa -3' miRNA: 3'- -CCaaCCGGAaguuCCAGU----UGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 27506 | 0.66 | 0.747843 |
Target: 5'- ---aGGCCgccgCcuGGauguacUCAGCCGGCCCc -3' miRNA: 3'- ccaaCCGGaa--GuuCC------AGUUGGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 26245 | 0.69 | 0.590696 |
Target: 5'- aGGUUGGCgaUgAacAGGUCAucgGCCaccguggcGGCCCg -3' miRNA: 3'- -CCAACCGgaAgU--UCCAGU---UGG--------UCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 26190 | 0.68 | 0.623627 |
Target: 5'- cGUUGGCCUUgAGGuaGUCAugcACCAGgggcugaCCCa -3' miRNA: 3'- cCAACCGGAAgUUC--CAGU---UGGUC-------GGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 25385 | 0.66 | 0.758529 |
Target: 5'- uGGUUGGauacgucucauCCaugcUCAGGGUCGG-CAGCUCg -3' miRNA: 3'- -CCAACC-----------GGa---AGUUCCAGUUgGUCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 24519 | 0.66 | 0.737031 |
Target: 5'- --cUGGCCcgUAAGuUCGACCAaGCCUg -3' miRNA: 3'- ccaACCGGaaGUUCcAGUUGGU-CGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 23587 | 0.7 | 0.534776 |
Target: 5'- cGGgucGCCUUCGAGGUUuccuGCCAggGUCCu -3' miRNA: 3'- -CCaacCGGAAGUUCCAGu---UGGU--CGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 23235 | 0.67 | 0.70397 |
Target: 5'- uGUUGGCaa-CcAGGUUAGCgaGGCCCg -3' miRNA: 3'- cCAACCGgaaGuUCCAGUUGg-UCGGG- -5' |
|||||||
22332 | 3' | -53 | NC_005045.1 | + | 21552 | 0.7 | 0.5238 |
Target: 5'- ---cGGCCaUCGcuccuAGGUCAACCuGCgCCa -3' miRNA: 3'- ccaaCCGGaAGU-----UCCAGUUGGuCG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home