miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22339 3' -54.1 NC_005045.1 + 37746 0.7 0.461208
Target:  5'- aGUGGCAC--GCCGaGCUAcUCGaAGACGGc -3'
miRNA:   3'- -CGUCGUGuuCGGC-CGAU-AGC-UCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 20796 0.7 0.471453
Target:  5'- cCAGUucCAGGCCGGUcggCGAGACGu -3'
miRNA:   3'- cGUCGu-GUUCGGCCGauaGCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 6182 0.7 0.49228
Target:  5'- -aGGCugAGGCCgaGGCUcgUGAG-CGGg -3'
miRNA:   3'- cgUCGugUUCGG--CCGAuaGCUCuGCC- -5'
22339 3' -54.1 NC_005045.1 + 18030 0.7 0.49228
Target:  5'- aGCAGCAgAucGCCcacgaagaGGCccuUGUCGGGGCGGc -3'
miRNA:   3'- -CGUCGUgUu-CGG--------CCG---AUAGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 14940 0.67 0.668946
Target:  5'- uGCGGgAC-AGCCGGUacagcaGGGGCGGc -3'
miRNA:   3'- -CGUCgUGuUCGGCCGauag--CUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 34455 0.67 0.680115
Target:  5'- cGCGGCACGuuGCCGGUgaaGUCcccgaAGACGc -3'
miRNA:   3'- -CGUCGUGUu-CGGCCGa--UAGc----UCUGCc -5'
22339 3' -54.1 NC_005045.1 + 14405 0.66 0.702296
Target:  5'- aCGGaACAGGCCgGGCUugAUCGAGccguCGGc -3'
miRNA:   3'- cGUCgUGUUCGG-CCGA--UAGCUCu---GCC- -5'
22339 3' -54.1 NC_005045.1 + 12774 0.66 0.722018
Target:  5'- cGCGGCu---GCCGGCUuccggGUCGuccucguccuucGACGGg -3'
miRNA:   3'- -CGUCGuguuCGGCCGA-----UAGCu-----------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 21939 0.66 0.723106
Target:  5'- aGCAGuCACuucGGuaaugucugugucCCGGCUGUCGGccucgcGGCGGa -3'
miRNA:   3'- -CGUC-GUGu--UC-------------GGCCGAUAGCU------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 5021 0.66 0.724192
Target:  5'- aGCAGCuu-GGCCGGUgcgcUGUCGcugaaGCGGa -3'
miRNA:   3'- -CGUCGuguUCGGCCG----AUAGCuc---UGCC- -5'
22339 3' -54.1 NC_005045.1 + 3076 0.68 0.612786
Target:  5'- aGCAGCACGucgaAGCCuucGgaGUCGAGAucaCGGc -3'
miRNA:   3'- -CGUCGUGU----UCGGc--CgaUAGCUCU---GCC- -5'
22339 3' -54.1 NC_005045.1 + 5901 0.69 0.557047
Target:  5'- gGCGGacaGCGGGCCGGCcuucuUCGAuaccaGCGGg -3'
miRNA:   3'- -CGUCg--UGUUCGGCCGau---AGCUc----UGCC- -5'
22339 3' -54.1 NC_005045.1 + 9883 0.69 0.513522
Target:  5'- -aGGCGCGGGCCGcCU-UCGGGGuCGGg -3'
miRNA:   3'- cgUCGUGUUCGGCcGAuAGCUCU-GCC- -5'
22339 3' -54.1 NC_005045.1 + 23486 0.7 0.49228
Target:  5'- cGCAGCcgGCGgagcuaccggGGCCGGCUGagCGGGugcuuGCGGa -3'
miRNA:   3'- -CGUCG--UGU----------UCGGCCGAUa-GCUC-----UGCC- -5'
22339 3' -54.1 NC_005045.1 + 30097 0.71 0.431202
Target:  5'- -aGGCGCAGGCCGaGCUGcguacccugcaCGAGGCGa -3'
miRNA:   3'- cgUCGUGUUCGGC-CGAUa----------GCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 41249 0.72 0.374793
Target:  5'- aGCAgGCACAGGCCGGUcagcccaCG-GGCGGu -3'
miRNA:   3'- -CGU-CGUGUUCGGCCGaua----GCuCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 40454 0.74 0.285051
Target:  5'- cGCAGCACAgaGGCUGGCgaucUCGuaGGGCGa -3'
miRNA:   3'- -CGUCGUGU--UCGGCCGau--AGC--UCUGCc -5'
22339 3' -54.1 NC_005045.1 + 41296 0.74 0.285051
Target:  5'- aCAGCAC-AGCgGGCgc-CGGGGCGGu -3'
miRNA:   3'- cGUCGUGuUCGgCCGauaGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 26745 0.66 0.728529
Target:  5'- gGCAGCA-AGGCCGGCagguccgccguagcAUUGAGGCu- -3'
miRNA:   3'- -CGUCGUgUUCGGCCGa-------------UAGCUCUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.