miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22340 3' -63.5 NC_005045.1 + 23045 1.09 0.000097
Target:  5'- gCGUCAGCAGGCCGCGCAGGCCCAGGCc -3'
miRNA:   3'- -GCAGUCGUCCGGCGCGUCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 29426 0.77 0.035612
Target:  5'- ---uGGCcaAGGCUGUGCAGGCUCAGGCc -3'
miRNA:   3'- gcagUCG--UCCGGCGCGUCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 34252 0.73 0.078549
Target:  5'- cCGcUCAGCAuuGGcCCGCGCAGGUaugCCGGGg -3'
miRNA:   3'- -GC-AGUCGU--CC-GGCGCGUCCG---GGUCCg -5'
22340 3' -63.5 NC_005045.1 + 4132 0.72 0.085389
Target:  5'- --gUAGCAGGCgccUGCcaGCAGGCCgAGGCa -3'
miRNA:   3'- gcaGUCGUCCG---GCG--CGUCCGGgUCCG- -5'
22340 3' -63.5 NC_005045.1 + 7266 0.72 0.091266
Target:  5'- cCGUaGGCGGGCCGCcguuguucugugugaGCAGcacGCCCAGGg -3'
miRNA:   3'- -GCAgUCGUCCGGCG---------------CGUC---CGGGUCCg -5'
22340 3' -63.5 NC_005045.1 + 26747 0.71 0.112506
Target:  5'- cCGgCAGCaAGGCCG-GCAGGUCCgccguagcauugAGGCu -3'
miRNA:   3'- -GCaGUCG-UCCGGCgCGUCCGGG------------UCCG- -5'
22340 3' -63.5 NC_005045.1 + 22139 0.7 0.137556
Target:  5'- aGUacaAGCAGGaccugaugCGCGCAGGCCgcaaccuguccgguuCGGGCa -3'
miRNA:   3'- gCAg--UCGUCCg-------GCGCGUCCGG---------------GUCCG- -5'
22340 3' -63.5 NC_005045.1 + 1552 0.7 0.139798
Target:  5'- -aUCGGCGGGCCGauuGaacaAGGC-CAGGCa -3'
miRNA:   3'- gcAGUCGUCCGGCg--Cg---UCCGgGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 33752 0.69 0.143608
Target:  5'- gGUCGGCcaGGGCCuugauggucgGCgGCAGGUUCGGGUc -3'
miRNA:   3'- gCAGUCG--UCCGG----------CG-CGUCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 23773 0.69 0.147514
Target:  5'- cCGUCGGUggugAGGCCGUccugaaGCAGGCUgccGGCg -3'
miRNA:   3'- -GCAGUCG----UCCGGCG------CGUCCGGgu-CCG- -5'
22340 3' -63.5 NC_005045.1 + 37991 0.69 0.151516
Target:  5'- aCGaUCGGC-GGCCagaGgGCAGcGCCUGGGCg -3'
miRNA:   3'- -GC-AGUCGuCCGG---CgCGUC-CGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 38937 0.69 0.153144
Target:  5'- aCGUCGaagcuGguGGCCGagguacggucacccaUGCGGGCCUcgGGGCg -3'
miRNA:   3'- -GCAGU-----CguCCGGC---------------GCGUCCGGG--UCCG- -5'
22340 3' -63.5 NC_005045.1 + 33217 0.69 0.158546
Target:  5'- aCG-CGGCucaGGGCCGUGUcagcaucggaccggAGGCCCagcAGGCu -3'
miRNA:   3'- -GCaGUCG---UCCGGCGCG--------------UCCGGG---UCCG- -5'
22340 3' -63.5 NC_005045.1 + 18614 0.69 0.159816
Target:  5'- -aUCAGCGGGUCGCcaaugaauuuGCcgAGGCgCAGGUa -3'
miRNA:   3'- gcAGUCGUCCGGCG----------CG--UCCGgGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 30374 0.69 0.159816
Target:  5'- -uUCGGCGuuGGCgcugaacuCGCGCAgGGCCUGGGCc -3'
miRNA:   3'- gcAGUCGU--CCG--------GCGCGU-CCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 27720 0.68 0.182386
Target:  5'- ---uGGCAGGCUguucagGUGCAuacGGCCCAGGg -3'
miRNA:   3'- gcagUCGUCCGG------CGCGU---CCGGGUCCg -5'
22340 3' -63.5 NC_005045.1 + 7869 0.68 0.182386
Target:  5'- uGUCGGUcugaacgguacaAGGCUGCGCgacAGGCUgGcGGCg -3'
miRNA:   3'- gCAGUCG------------UCCGGCGCG---UCCGGgU-CCG- -5'
22340 3' -63.5 NC_005045.1 + 28526 0.68 0.182386
Target:  5'- aGcCGGC-GGaaGCGCcgAGGCUCAGGCc -3'
miRNA:   3'- gCaGUCGuCCggCGCG--UCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 20087 0.68 0.192178
Target:  5'- aGU--GCGGGuCCGgcUGCGGGCCgAGGCu -3'
miRNA:   3'- gCAguCGUCC-GGC--GCGUCCGGgUCCG- -5'
22340 3' -63.5 NC_005045.1 + 30243 0.67 0.202428
Target:  5'- ---gAGCAGGgCGC-CGuGGCCUGGGCg -3'
miRNA:   3'- gcagUCGUCCgGCGcGU-CCGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.