miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22340 3' -63.5 NC_005045.1 + 387 0.66 0.267555
Target:  5'- uGUCGGguGGUgGUGCGGGagu-GGCu -3'
miRNA:   3'- gCAGUCguCCGgCGCGUCCggguCCG- -5'
22340 3' -63.5 NC_005045.1 + 1552 0.7 0.139798
Target:  5'- -aUCGGCGGGCCGauuGaacaAGGC-CAGGCa -3'
miRNA:   3'- gcAGUCGUCCGGCg--Cg---UCCGgGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 4132 0.72 0.085389
Target:  5'- --gUAGCAGGCgccUGCcaGCAGGCCgAGGCa -3'
miRNA:   3'- gcaGUCGUCCG---GCG--CGUCCGGgUCCG- -5'
22340 3' -63.5 NC_005045.1 + 4204 0.66 0.247645
Target:  5'- aCGUgCAGUAGGCCG---GGGCCUacugaccGGGCu -3'
miRNA:   3'- -GCA-GUCGUCCGGCgcgUCCGGG-------UCCG- -5'
22340 3' -63.5 NC_005045.1 + 5498 0.66 0.254566
Target:  5'- gGUCAGCAGGCauaCcCAGGCCaugauGGUu -3'
miRNA:   3'- gCAGUCGUCCGgc-GcGUCCGGgu---CCG- -5'
22340 3' -63.5 NC_005045.1 + 5837 0.67 0.230144
Target:  5'- uCGUCGGCGcGCuuCGCGUcGGCCU-GGCa -3'
miRNA:   3'- -GCAGUCGUcCG--GCGCGuCCGGGuCCG- -5'
22340 3' -63.5 NC_005045.1 + 7266 0.72 0.091266
Target:  5'- cCGUaGGCGGGCCGCcguuguucugugugaGCAGcacGCCCAGGg -3'
miRNA:   3'- -GCAgUCGUCCGGCG---------------CGUC---CGGGUCCg -5'
22340 3' -63.5 NC_005045.1 + 7869 0.68 0.182386
Target:  5'- uGUCGGUcugaacgguacaAGGCUGCGCgacAGGCUgGcGGCg -3'
miRNA:   3'- gCAGUCG------------UCCGGCGCG---UCCGGgU-CCG- -5'
22340 3' -63.5 NC_005045.1 + 9697 0.66 0.234865
Target:  5'- gCGUCGGCGuacucgguacuccaGCCaccgucccggacgaaGCGCGGGUCCAGGg -3'
miRNA:   3'- -GCAGUCGUc-------------CGG---------------CGCGUCCGGGUCCg -5'
22340 3' -63.5 NC_005045.1 + 9907 0.67 0.21315
Target:  5'- aCGUCcuuguGCAGGUaCGCaccCAGGCgCGGGCc -3'
miRNA:   3'- -GCAGu----CGUCCG-GCGc--GUCCGgGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 15897 0.67 0.223783
Target:  5'- cCGcCAGCGGGUUuuguuugaucuugGCGUAGGCuuCCAGGa -3'
miRNA:   3'- -GCaGUCGUCCGG-------------CGCGUCCG--GGUCCg -5'
22340 3' -63.5 NC_005045.1 + 18572 0.67 0.202428
Target:  5'- cCGUCGGCAGGUCGauuCGuGCCUcuucGGGCa -3'
miRNA:   3'- -GCAGUCGUCCGGCgc-GUcCGGG----UCCG- -5'
22340 3' -63.5 NC_005045.1 + 18614 0.69 0.159816
Target:  5'- -aUCAGCGGGUCGCcaaugaauuuGCcgAGGCgCAGGUa -3'
miRNA:   3'- gcAGUCGUCCGGCG----------CG--UCCGgGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 20087 0.68 0.192178
Target:  5'- aGU--GCGGGuCCGgcUGCGGGCCgAGGCu -3'
miRNA:   3'- gCAguCGUCC-GGC--GCGUCCGGgUCCG- -5'
22340 3' -63.5 NC_005045.1 + 20302 0.66 0.254566
Target:  5'- -aUCGGgAuauccuccGCUGCGCAGGCCaGGGCg -3'
miRNA:   3'- gcAGUCgUc-------CGGCGCGUCCGGgUCCG- -5'
22340 3' -63.5 NC_005045.1 + 22139 0.7 0.137556
Target:  5'- aGUacaAGCAGGaccugaugCGCGCAGGCCgcaaccuguccgguuCGGGCa -3'
miRNA:   3'- gCAg--UCGUCCg-------GCGCGUCCGG---------------GUCCG- -5'
22340 3' -63.5 NC_005045.1 + 23045 1.09 0.000097
Target:  5'- gCGUCAGCAGGCCGCGCAGGCCCAGGCc -3'
miRNA:   3'- -GCAGUCGUCCGGCGCGUCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 23133 0.66 0.248267
Target:  5'- --cCAGCaAGGUCuccuGCGC-GGCCUGGGCc -3'
miRNA:   3'- gcaGUCG-UCCGG----CGCGuCCGGGUCCG- -5'
22340 3' -63.5 NC_005045.1 + 23773 0.69 0.147514
Target:  5'- cCGUCGGUggugAGGCCGUccugaaGCAGGCUgccGGCg -3'
miRNA:   3'- -GCAGUCG----UCCGGCG------CGUCCGGgu-CCG- -5'
22340 3' -63.5 NC_005045.1 + 23853 0.66 0.267555
Target:  5'- gGUCGGCugauGGaCuCGgGCGauGCCCAGGCc -3'
miRNA:   3'- gCAGUCGu---CC-G-GCgCGUc-CGGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.