miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22341 5' -56.5 NC_005045.1 + 6861 0.69 0.375572
Target:  5'- gGCCUgaUGGUAGGuuccuGCCUCGuaguAGGUGg -3'
miRNA:   3'- gUGGG--ACCGUCCuu---UGGAGCu---UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 886 0.69 0.366724
Target:  5'- gCGCCCUGGCgAGGGuauuGACa-CGuGGGCGg -3'
miRNA:   3'- -GUGGGACCG-UCCU----UUGgaGCuUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 29586 0.7 0.358021
Target:  5'- gCACCUccaGCGGGAuauCCUCGGAGGUc -3'
miRNA:   3'- -GUGGGac-CGUCCUuu-GGAGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 1024 0.7 0.316707
Target:  5'- aACCCUGucucCAGGcuGCCUaUGGAGGCGg -3'
miRNA:   3'- gUGGGACc---GUCCuuUGGA-GCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 40528 0.71 0.308888
Target:  5'- aGCCCUGGCGGcugcCCUCGccGGCc -3'
miRNA:   3'- gUGGGACCGUCcuuuGGAGCuuCCGc -5'
22341 5' -56.5 NC_005045.1 + 11229 0.73 0.214644
Target:  5'- gUACCC-GGCGGGGAAUCUCGuucaucAGGUGc -3'
miRNA:   3'- -GUGGGaCCGUCCUUUGGAGCu-----UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 16929 0.73 0.214644
Target:  5'- gCGCCCUGGCAGuccauguaGAucACCUCGucGGUGu -3'
miRNA:   3'- -GUGGGACCGUC--------CUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 7535 0.74 0.182426
Target:  5'- uGCCCUGGCccgAGGAuGCCUCGGAcuGGaCGc -3'
miRNA:   3'- gUGGGACCG---UCCUuUGGAGCUU--CC-GC- -5'
22341 5' -56.5 NC_005045.1 + 42189 0.75 0.172675
Target:  5'- gCAUCCUGGCGGGAgugucAACCcugCGguGGCGu -3'
miRNA:   3'- -GUGGGACCGUCCU-----UUGGa--GCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 23063 0.75 0.172675
Target:  5'- gGCCCaGGCcgcgcAGGAGACCUUgcugGAAGGCGc -3'
miRNA:   3'- gUGGGaCCG-----UCCUUUGGAG----CUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 126 0.75 0.172675
Target:  5'- gCAUCCUGGCGGGAgugucAACCcugCGguGGCGu -3'
miRNA:   3'- -GUGGGACCGUCCU-----UUGGa--GCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 23515 1.09 0.000543
Target:  5'- gCACCCUGGCAGGAAACCUCGAAGGCGa -3'
miRNA:   3'- -GUGGGACCGUCCUUUGGAGCUUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.