miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22342 3' -53.5 NC_005045.1 + 23806 1.12 0.000847
Target:  5'- cCGGCGUCUUCAACCAACACGCGGACCc -3'
miRNA:   3'- -GCCGCAGAAGUUGGUUGUGCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 27477 0.75 0.283522
Target:  5'- uGGUGUUUgguACCAGCACGgCGGACg -3'
miRNA:   3'- gCCGCAGAaguUGGUUGUGC-GCCUGg -5'
22342 3' -53.5 NC_005045.1 + 35303 0.73 0.390761
Target:  5'- cCGGCcucggCUUCAccGCCGACAUGUGGGgCg -3'
miRNA:   3'- -GCCGca---GAAGU--UGGUUGUGCGCCUgG- -5'
22342 3' -53.5 NC_005045.1 + 18942 0.72 0.409448
Target:  5'- aGcGCGUCUUCAAcuCCGGgGCGgGGugCu -3'
miRNA:   3'- gC-CGCAGAAGUU--GGUUgUGCgCCugG- -5'
22342 3' -53.5 NC_005045.1 + 26036 0.72 0.418998
Target:  5'- gGGCugGUCggUAugCAGCAgGUGGGCCa -3'
miRNA:   3'- gCCG--CAGaaGUugGUUGUgCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 20898 0.72 0.428682
Target:  5'- uGGCGUC-UCGG-CGGCGCaaGCGGACUg -3'
miRNA:   3'- gCCGCAGaAGUUgGUUGUG--CGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 41368 0.72 0.438496
Target:  5'- gGGCGUCcugauaGGCCGcuACAgCGCGGAUCa -3'
miRNA:   3'- gCCGCAGaag---UUGGU--UGU-GCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 10490 0.71 0.445443
Target:  5'- gGGUGUCgccCcGCCGGCAaucuuccaugaggcUGCGGACCa -3'
miRNA:   3'- gCCGCAGaa-GuUGGUUGU--------------GCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 34378 0.7 0.510523
Target:  5'- gGGCGUCUUCGgggacuucACCGGCAacgugcCGCGuGAgCa -3'
miRNA:   3'- gCCGCAGAAGU--------UGGUUGU------GCGC-CUgG- -5'
22342 3' -53.5 NC_005045.1 + 34528 0.7 0.553835
Target:  5'- gGGCGUCUUCAACgu-UAUGaaGGCCa -3'
miRNA:   3'- gCCGCAGAAGUUGguuGUGCgcCUGG- -5'
22342 3' -53.5 NC_005045.1 + 26939 0.69 0.575907
Target:  5'- aGGUGUCggUAGCCucaucccaGCGCaGGGCCa -3'
miRNA:   3'- gCCGCAGaaGUUGGuug-----UGCG-CCUGG- -5'
22342 3' -53.5 NC_005045.1 + 745 0.69 0.58702
Target:  5'- aGGCGUCcaUCAGCgCcGCAgGUGcGACCg -3'
miRNA:   3'- gCCGCAGa-AGUUG-GuUGUgCGC-CUGG- -5'
22342 3' -53.5 NC_005045.1 + 13987 0.68 0.631768
Target:  5'- cCGGCcuuaaaUCUUCAuCCGACACGagagaGaGACCa -3'
miRNA:   3'- -GCCGc-----AGAAGUuGGUUGUGCg----C-CUGG- -5'
22342 3' -53.5 NC_005045.1 + 21125 0.68 0.642981
Target:  5'- aGGCGcCgcCGGCCAACuggccauCGCGGAauaCCa -3'
miRNA:   3'- gCCGCaGaaGUUGGUUGu------GCGCCU---GG- -5'
22342 3' -53.5 NC_005045.1 + 32509 0.68 0.642981
Target:  5'- cCGGUaUC-UCGGCCugcucCACGCGGGCg -3'
miRNA:   3'- -GCCGcAGaAGUUGGuu---GUGCGCCUGg -5'
22342 3' -53.5 NC_005045.1 + 31272 0.67 0.68762
Target:  5'- uCGGUGUCcUCGGCgAACcacuGCGCGG-CUu -3'
miRNA:   3'- -GCCGCAGaAGUUGgUUG----UGCGCCuGG- -5'
22342 3' -53.5 NC_005045.1 + 7671 0.67 0.68762
Target:  5'- uCGGCuuaUCUUCccuACCG--ACGCGGGCUg -3'
miRNA:   3'- -GCCGc--AGAAGu--UGGUugUGCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 2845 0.67 0.69867
Target:  5'- cCGGCGggccgCUgcaacgCAGCCGACAUgGCGcugugcGACCa -3'
miRNA:   3'- -GCCGCa----GAa-----GUUGGUUGUG-CGC------CUGG- -5'
22342 3' -53.5 NC_005045.1 + 33249 0.67 0.720558
Target:  5'- uGGCGUCcaugaUCGucucggacgccGCCAGgACGCGGcucaggGCCg -3'
miRNA:   3'- gCCGCAGa----AGU-----------UGGUUgUGCGCC------UGG- -5'
22342 3' -53.5 NC_005045.1 + 13202 0.67 0.731371
Target:  5'- aGGCGcCUUCAG-CGAgAUG-GGGCCg -3'
miRNA:   3'- gCCGCaGAAGUUgGUUgUGCgCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.