Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22342 | 3' | -53.5 | NC_005045.1 | + | 745 | 0.69 | 0.58702 |
Target: 5'- aGGCGUCcaUCAGCgCcGCAgGUGcGACCg -3' miRNA: 3'- gCCGCAGa-AGUUG-GuUGUgCGC-CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 2845 | 0.67 | 0.69867 |
Target: 5'- cCGGCGggccgCUgcaacgCAGCCGACAUgGCGcugugcGACCa -3' miRNA: 3'- -GCCGCa----GAa-----GUUGGUUGUG-CGC------CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 4401 | 0.66 | 0.763143 |
Target: 5'- uCGGCGUag-CAGCUuggGACAgCaCGGGCCg -3' miRNA: 3'- -GCCGCAgaaGUUGG---UUGU-GcGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 5456 | 0.66 | 0.773471 |
Target: 5'- gCGGCGcUCUUguGCCu---CGUGGGCa -3' miRNA: 3'- -GCCGC-AGAAguUGGuuguGCGCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 6494 | 0.66 | 0.752676 |
Target: 5'- gCGGCGUgUgccggUAGCCuugugcauuacAugGCGCaGGACCu -3' miRNA: 3'- -GCCGCAgAa----GUUGG-----------UugUGCG-CCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 7671 | 0.67 | 0.68762 |
Target: 5'- uCGGCuuaUCUUCccuACCG--ACGCGGGCUg -3' miRNA: 3'- -GCCGc--AGAAGu--UGGUugUGCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 8986 | 0.66 | 0.783647 |
Target: 5'- uGGCccacGUCaagggUGGCCAGCGCaaGGACCa -3' miRNA: 3'- gCCG----CAGaa---GUUGGUUGUGcgCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 10490 | 0.71 | 0.445443 |
Target: 5'- gGGUGUCgccCcGCCGGCAaucuuccaugaggcUGCGGACCa -3' miRNA: 3'- gCCGCAGaa-GuUGGUUGU--------------GCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 13202 | 0.67 | 0.731371 |
Target: 5'- aGGCGcCUUCAG-CGAgAUG-GGGCCg -3' miRNA: 3'- gCCGCaGAAGUUgGUUgUGCgCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 13987 | 0.68 | 0.631768 |
Target: 5'- cCGGCcuuaaaUCUUCAuCCGACACGagagaGaGACCa -3' miRNA: 3'- -GCCGc-----AGAAGUuGGUUGUGCg----C-CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 15179 | 0.66 | 0.773471 |
Target: 5'- uGGCug---CGGCCAcUACGCGGACa -3' miRNA: 3'- gCCGcagaaGUUGGUuGUGCGCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 16008 | 0.67 | 0.731371 |
Target: 5'- aGGCGUCcagcUCGAUgAuccACugGCGGaagGCCg -3' miRNA: 3'- gCCGCAGa---AGUUGgU---UGugCGCC---UGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 18206 | 0.66 | 0.751622 |
Target: 5'- gCGGCGgggcCggCAGCCAagcuccgGCACuugcuGCGGAUCa -3' miRNA: 3'- -GCCGCa---GaaGUUGGU-------UGUG-----CGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 18942 | 0.72 | 0.409448 |
Target: 5'- aGcGCGUCUUCAAcuCCGGgGCGgGGugCu -3' miRNA: 3'- gC-CGCAGAAGUU--GGUUgUGCgCCugG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 20898 | 0.72 | 0.428682 |
Target: 5'- uGGCGUC-UCGG-CGGCGCaaGCGGACUg -3' miRNA: 3'- gCCGCAGaAGUUgGUUGUG--CGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 21125 | 0.68 | 0.642981 |
Target: 5'- aGGCGcCgcCGGCCAACuggccauCGCGGAauaCCa -3' miRNA: 3'- gCCGCaGaaGUUGGUUGu------GCGCCU---GG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 23714 | 0.66 | 0.752676 |
Target: 5'- gGGCGUCcu-GACCuaugucGAUGCGCaGACCa -3' miRNA: 3'- gCCGCAGaagUUGG------UUGUGCGcCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 23806 | 1.12 | 0.000847 |
Target: 5'- cCGGCGUCUUCAACCAACACGCGGACCc -3' miRNA: 3'- -GCCGCAGAAGUUGGUUGUGCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 24431 | 0.66 | 0.773471 |
Target: 5'- uCGGCuGcgcuccagcUCUUC-ACCGGCACGaCGGcCCu -3' miRNA: 3'- -GCCG-C---------AGAAGuUGGUUGUGC-GCCuGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 26036 | 0.72 | 0.418998 |
Target: 5'- gGGCugGUCggUAugCAGCAgGUGGGCCa -3' miRNA: 3'- gCCG--CAGaaGUugGUUGUgCGCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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