miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22342 3' -53.5 NC_005045.1 + 26939 0.69 0.575907
Target:  5'- aGGUGUCggUAGCCucaucccaGCGCaGGGCCa -3'
miRNA:   3'- gCCGCAGaaGUUGGuug-----UGCG-CCUGG- -5'
22342 3' -53.5 NC_005045.1 + 27477 0.75 0.283522
Target:  5'- uGGUGUUUgguACCAGCACGgCGGACg -3'
miRNA:   3'- gCCGCAGAaguUGGUUGUGC-GCCUGg -5'
22342 3' -53.5 NC_005045.1 + 30555 0.66 0.773471
Target:  5'- gCGG-GUCUgcUC-ACCAGCgACaCGGGCCg -3'
miRNA:   3'- -GCCgCAGA--AGuUGGUUG-UGcGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 31272 0.67 0.68762
Target:  5'- uCGGUGUCcUCGGCgAACcacuGCGCGG-CUu -3'
miRNA:   3'- -GCCGCAGaAGUUGgUUG----UGCGCCuGG- -5'
22342 3' -53.5 NC_005045.1 + 32509 0.68 0.642981
Target:  5'- cCGGUaUC-UCGGCCugcucCACGCGGGCg -3'
miRNA:   3'- -GCCGcAGaAGUUGGuu---GUGCGCCUGg -5'
22342 3' -53.5 NC_005045.1 + 32882 0.66 0.751622
Target:  5'- -aGCGUUcaUCAcGCCGACgguagcaGCGUGGACCg -3'
miRNA:   3'- gcCGCAGa-AGU-UGGUUG-------UGCGCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 33249 0.67 0.720558
Target:  5'- uGGCGUCcaugaUCGucucggacgccGCCAGgACGCGGcucaggGCCg -3'
miRNA:   3'- gCCGCAGa----AGU-----------UGGUUgUGCGCC------UGG- -5'
22342 3' -53.5 NC_005045.1 + 33583 0.66 0.738879
Target:  5'- uGGCuGUCcgCGACCAGCucaacgagcaggucACGCGGgagcugcugcGCCg -3'
miRNA:   3'- gCCG-CAGaaGUUGGUUG--------------UGCGCC----------UGG- -5'
22342 3' -53.5 NC_005045.1 + 34378 0.7 0.510523
Target:  5'- gGGCGUCUUCGgggacuucACCGGCAacgugcCGCGuGAgCa -3'
miRNA:   3'- gCCGCAGAAGU--------UGGUUGU------GCGC-CUgG- -5'
22342 3' -53.5 NC_005045.1 + 34528 0.7 0.553835
Target:  5'- gGGCGUCUUCAACgu-UAUGaaGGCCa -3'
miRNA:   3'- gCCGCAGAAGUUGguuGUGCgcCUGG- -5'
22342 3' -53.5 NC_005045.1 + 35303 0.73 0.390761
Target:  5'- cCGGCcucggCUUCAccGCCGACAUGUGGGgCg -3'
miRNA:   3'- -GCCGca---GAAGU--UGGUUGUGCGCCUgG- -5'
22342 3' -53.5 NC_005045.1 + 37004 0.66 0.783647
Target:  5'- uGGCGagaaagugCAuACUGGCACGgGGACCu -3'
miRNA:   3'- gCCGCagaa----GU-UGGUUGUGCgCCUGG- -5'
22342 3' -53.5 NC_005045.1 + 40818 0.66 0.773471
Target:  5'- -aGCG-CUUCAACCAAggcCGCGCcacugaGGGCUg -3'
miRNA:   3'- gcCGCaGAAGUUGGUU---GUGCG------CCUGG- -5'
22342 3' -53.5 NC_005045.1 + 41368 0.72 0.438496
Target:  5'- gGGCGUCcugauaGGCCGcuACAgCGCGGAUCa -3'
miRNA:   3'- gCCGCAGaag---UUGGU--UGU-GCGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.