Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22342 | 3' | -53.5 | NC_005045.1 | + | 32509 | 0.68 | 0.642981 |
Target: 5'- cCGGUaUC-UCGGCCugcucCACGCGGGCg -3' miRNA: 3'- -GCCGcAGaAGUUGGuu---GUGCGCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 13987 | 0.68 | 0.631768 |
Target: 5'- cCGGCcuuaaaUCUUCAuCCGACACGagagaGaGACCa -3' miRNA: 3'- -GCCGc-----AGAAGUuGGUUGUGCg----C-CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 745 | 0.69 | 0.58702 |
Target: 5'- aGGCGUCcaUCAGCgCcGCAgGUGcGACCg -3' miRNA: 3'- gCCGCAGa-AGUUG-GuUGUgCGC-CUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 26939 | 0.69 | 0.575907 |
Target: 5'- aGGUGUCggUAGCCucaucccaGCGCaGGGCCa -3' miRNA: 3'- gCCGCAGaaGUUGGuug-----UGCG-CCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 34528 | 0.7 | 0.553835 |
Target: 5'- gGGCGUCUUCAACgu-UAUGaaGGCCa -3' miRNA: 3'- gCCGCAGAAGUUGguuGUGCgcCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 34378 | 0.7 | 0.510523 |
Target: 5'- gGGCGUCUUCGgggacuucACCGGCAacgugcCGCGuGAgCa -3' miRNA: 3'- gCCGCAGAAGU--------UGGUUGU------GCGC-CUgG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 10490 | 0.71 | 0.445443 |
Target: 5'- gGGUGUCgccCcGCCGGCAaucuuccaugaggcUGCGGACCa -3' miRNA: 3'- gCCGCAGaa-GuUGGUUGU--------------GCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 41368 | 0.72 | 0.438496 |
Target: 5'- gGGCGUCcugauaGGCCGcuACAgCGCGGAUCa -3' miRNA: 3'- gCCGCAGaag---UUGGU--UGU-GCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 20898 | 0.72 | 0.428682 |
Target: 5'- uGGCGUC-UCGG-CGGCGCaaGCGGACUg -3' miRNA: 3'- gCCGCAGaAGUUgGUUGUG--CGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 26036 | 0.72 | 0.418998 |
Target: 5'- gGGCugGUCggUAugCAGCAgGUGGGCCa -3' miRNA: 3'- gCCG--CAGaaGUugGUUGUgCGCCUGG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 18942 | 0.72 | 0.409448 |
Target: 5'- aGcGCGUCUUCAAcuCCGGgGCGgGGugCu -3' miRNA: 3'- gC-CGCAGAAGUU--GGUUgUGCgCCugG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 35303 | 0.73 | 0.390761 |
Target: 5'- cCGGCcucggCUUCAccGCCGACAUGUGGGgCg -3' miRNA: 3'- -GCCGca---GAAGU--UGGUUGUGCGCCUgG- -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 27477 | 0.75 | 0.283522 |
Target: 5'- uGGUGUUUgguACCAGCACGgCGGACg -3' miRNA: 3'- gCCGCAGAaguUGGUUGUGC-GCCUGg -5' |
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22342 | 3' | -53.5 | NC_005045.1 | + | 23806 | 1.12 | 0.000847 |
Target: 5'- cCGGCGUCUUCAACCAACACGCGGACCc -3' miRNA: 3'- -GCCGCAGAAGUUGGUUGUGCGCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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