Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22349 | 5' | -63.6 | NC_005045.1 | + | 25881 | 1.08 | 0.000117 |
Target: 5'- gCGCCUGCCGGGCCAGCUCAGCGAGCAg -3' miRNA: 3'- -GCGGACGGCCCGGUCGAGUCGCUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 34574 | 0.79 | 0.025763 |
Target: 5'- aCGcCCUGCCGGugggccaucgugGCCAGCUCAGCaAGCGa -3' miRNA: 3'- -GC-GGACGGCC------------CGGUCGAGUCGcUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 39163 | 0.73 | 0.072045 |
Target: 5'- gCGCaucugGCCGGGCCGGUUCccgacccuGGaCGAGCAg -3' miRNA: 3'- -GCGga---CGGCCCGGUCGAG--------UC-GCUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 28710 | 0.71 | 0.09531 |
Target: 5'- gGCCUGCUGGGUCAGaagaguaccaCGGCGGGgCAa -3' miRNA: 3'- gCGGACGGCCCGGUCga--------GUCGCUC-GU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 23483 | 0.71 | 0.10075 |
Target: 5'- aGCCggcggaGCUaccgGGGCCGGCUgAGCGGGUg -3' miRNA: 3'- gCGGa-----CGG----CCCGGUCGAgUCGCUCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 5234 | 0.7 | 0.129038 |
Target: 5'- uGCCcugGCCGuGuGCCAGC--AGCGGGCAg -3' miRNA: 3'- gCGGa--CGGC-C-CGGUCGagUCGCUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 34233 | 0.69 | 0.14345 |
Target: 5'- aCGCCggcaguaUGUCGGGCC-GCUCAGCauuGGCc -3' miRNA: 3'- -GCGG-------ACGGCCCGGuCGAGUCGc--UCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 28889 | 0.69 | 0.15594 |
Target: 5'- aCGCaacuccaGCCGGGCCAgaguGCUCGGCgcgGAGUg -3' miRNA: 3'- -GCGga-----CGGCCCGGU----CGAGUCG---CUCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 34318 | 0.68 | 0.160174 |
Target: 5'- -aCCUGCgCGGGCCAauGCUgAGCG-GCc -3' miRNA: 3'- gcGGACG-GCCCGGU--CGAgUCGCuCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 33913 | 0.68 | 0.168955 |
Target: 5'- gGCUcGgCGGGCCAGCcCAG-GGGCGg -3' miRNA: 3'- gCGGaCgGCCCGGUCGaGUCgCUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 33202 | 0.68 | 0.173046 |
Target: 5'- aCGCCaUGCCGGGUUacaccaaGGCUCaggccaAGUGGGCc -3' miRNA: 3'- -GCGG-ACGGCCCGG-------UCGAG------UCGCUCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 35753 | 0.68 | 0.178165 |
Target: 5'- aCGCCUGCCcaGGUcccggacacgCAGUUCAGCcaGGGCAu -3' miRNA: 3'- -GCGGACGGc-CCG----------GUCGAGUCG--CUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 14944 | 0.68 | 0.178165 |
Target: 5'- uGCCUGCgGGacaGCCGGUaCAGCagGGGCGg -3' miRNA: 3'- gCGGACGgCC---CGGUCGaGUCG--CUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 33129 | 0.67 | 0.197928 |
Target: 5'- aGCCUGCUGGGCCuccgguccgauGCUgacaCGGCccuGAGCc -3' miRNA: 3'- gCGGACGGCCCGGu----------CGA----GUCG---CUCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 16431 | 0.67 | 0.20851 |
Target: 5'- uGCCUGCCGgcgcuuGGCCAGCUUcGCuucauGCu -3' miRNA: 3'- gCGGACGGC------CCGGUCGAGuCGcu---CGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 11678 | 0.67 | 0.20851 |
Target: 5'- cCGCCguacuUCGGaGCCAGCUCGuCGAGUg -3' miRNA: 3'- -GCGGac---GGCC-CGGUCGAGUcGCUCGu -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 17895 | 0.66 | 0.225296 |
Target: 5'- aGCCUccucgGUCaGGGCCAcCUCGGCG-GCGg -3' miRNA: 3'- gCGGA-----CGG-CCCGGUcGAGUCGCuCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 33847 | 0.66 | 0.23114 |
Target: 5'- cCGCCc-CUGGGCUGGCccgccgagccaUCAGCGAGgCAg -3' miRNA: 3'- -GCGGacGGCCCGGUCG-----------AGUCGCUC-GU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 7269 | 0.66 | 0.243213 |
Target: 5'- gCGCCguaGgCGGGCCGccguuGUUCuguGUGAGCAg -3' miRNA: 3'- -GCGGa--CgGCCCGGU-----CGAGu--CGCUCGU- -5' |
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22349 | 5' | -63.6 | NC_005045.1 | + | 11610 | 0.66 | 0.249444 |
Target: 5'- gGCCUGCUGGGuacaccagacCCGGC-CAcGCGucGCAg -3' miRNA: 3'- gCGGACGGCCC----------GGUCGaGU-CGCu-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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