miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22353 3' -58.1 NC_005045.1 + 4434 0.66 0.493431
Target:  5'- cCGCaguGCUGCCCGUGGuUAUCcaugacgacggcccuGCCAAg -3'
miRNA:   3'- cGCGg--CGACGGGCGCU-AUAG---------------CGGUUg -5'
22353 3' -58.1 NC_005045.1 + 31735 0.66 0.489303
Target:  5'- gGC-CCGCUGCCaCGUuccguucuccGAUcUCGCCAc- -3'
miRNA:   3'- -CGcGGCGACGG-GCG----------CUAuAGCGGUug -5'
22353 3' -58.1 NC_005045.1 + 34590 0.66 0.489303
Target:  5'- uGCGCCGCaaCCCG-GAccUCGCUGAUg -3'
miRNA:   3'- -CGCGGCGacGGGCgCUauAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 33999 0.66 0.479054
Target:  5'- cGCGcCCGCUGCacaauggccugUGCGAUGguaucggCGUCAGCc -3'
miRNA:   3'- -CGC-GGCGACGg----------GCGCUAUa------GCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 3560 0.66 0.467904
Target:  5'- -gGCCGCucggcgaUGCuuGCGAa---GCCAGCg -3'
miRNA:   3'- cgCGGCG-------ACGggCGCUauagCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 28510 0.66 0.457884
Target:  5'- aGCGCCaggggauGCUaGCCgGCGGaagCGCCGAg -3'
miRNA:   3'- -CGCGG-------CGA-CGGgCGCUauaGCGGUUg -5'
22353 3' -58.1 NC_005045.1 + 16437 0.66 0.448965
Target:  5'- -gGCgGCUGCCUGCcGGcgcuUgGCCAGCu -3'
miRNA:   3'- cgCGgCGACGGGCG-CUau--AgCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 30147 0.66 0.448965
Target:  5'- uGCGaaccgCGCUGCCCaCGGacUCGCCGu- -3'
miRNA:   3'- -CGCg----GCGACGGGcGCUauAGCGGUug -5'
22353 3' -58.1 NC_005045.1 + 34574 0.67 0.439169
Target:  5'- aCGCC-CUGCCgGUGGgccaucGUgGCCAGCu -3'
miRNA:   3'- cGCGGcGACGGgCGCUa-----UAgCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 34248 0.67 0.439169
Target:  5'- cGgGCCGCUcagcauugGCCCGCGcagGUAU-GCCGGg -3'
miRNA:   3'- -CgCGGCGA--------CGGGCGC---UAUAgCGGUUg -5'
22353 3' -58.1 NC_005045.1 + 8703 0.67 0.438196
Target:  5'- uGCGCCGCaGCUCaaGCGGUAcuUCgacccagGCCGGCc -3'
miRNA:   3'- -CGCGGCGaCGGG--CGCUAU--AG-------CGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 17505 0.67 0.429496
Target:  5'- uGCGCCGUgGUgUUGCGAgugUAUCGCCcACg -3'
miRNA:   3'- -CGCGGCGaCG-GGCGCU---AUAGCGGuUG- -5'
22353 3' -58.1 NC_005045.1 + 15784 0.67 0.419002
Target:  5'- uUGCCGUUGaaucgaucgauucCCCG-GAUGUUGUCAGCg -3'
miRNA:   3'- cGCGGCGAC-------------GGGCgCUAUAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 23090 0.67 0.401249
Target:  5'- aCGCUGCUGCuCCGCcucugccuGUAgcUCGUCGGCg -3'
miRNA:   3'- cGCGGCGACG-GGCGc-------UAU--AGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 27135 0.68 0.386675
Target:  5'- aGCGCgGCUGCCgacuucuugaaccaGCGGUGuggauuguugcUgGCCGACa -3'
miRNA:   3'- -CGCGgCGACGGg-------------CGCUAU-----------AgCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 23160 0.68 0.374212
Target:  5'- cUGCCGCcggGCCuCGCuaaccugGUUGCCAACa -3'
miRNA:   3'- cGCGGCGa--CGG-GCGcua----UAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 35467 0.68 0.374212
Target:  5'- gGCGCCGCagggGCaCUGCcuu-UCGUCAACg -3'
miRNA:   3'- -CGCGGCGa---CG-GGCGcuauAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 27505 0.68 0.374212
Target:  5'- -gGCCGCcGCCUG-GAUGUacucaGCCGGCc -3'
miRNA:   3'- cgCGGCGaCGGGCgCUAUAg----CGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 40520 0.68 0.365478
Target:  5'- cGCGgCGCaGCCCugGCGGcUGcccUCGCCGGCc -3'
miRNA:   3'- -CGCgGCGaCGGG--CGCU-AU---AGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 14924 0.68 0.365478
Target:  5'- cGUGCCGCaGgUgGCGAaUGUCGCCGc- -3'
miRNA:   3'- -CGCGGCGaCgGgCGCU-AUAGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.