miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22353 5' -54.9 NC_005045.1 + 7047 0.66 0.664912
Target:  5'- aCCGCgaGGCgaacugGCCaGCAGGaGAGCCGg- -3'
miRNA:   3'- -GGCGa-UCGa-----UGG-CGUUCgUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 34251 0.66 0.664912
Target:  5'- gCCGCUcAGCauugGCCcgcGCAGGUAuGCCGg- -3'
miRNA:   3'- -GGCGA-UCGa---UGG---CGUUCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 16367 0.66 0.653633
Target:  5'- -aGCUGGCcaagcGCCgGCAGGCA-GCCGc- -3'
miRNA:   3'- ggCGAUCGa----UGG-CGUUCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 16986 0.66 0.650245
Target:  5'- uCCGCUucguccagcAGCUugUGCAGggccaccagcagguGCAGGUCGUc -3'
miRNA:   3'- -GGCGA---------UCGAugGCGUU--------------CGUUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 32174 0.66 0.631023
Target:  5'- -gGCUGGaUGCCGCAGG--GGCCGa- -3'
miRNA:   3'- ggCGAUCgAUGGCGUUCguUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 25707 0.66 0.631023
Target:  5'- cUCGUgAGUguaUACCGCGAGCGcAGCCugGUGc -3'
miRNA:   3'- -GGCGaUCG---AUGGCGUUCGU-UCGG--CAC- -5'
22353 5' -54.9 NC_005045.1 + 25001 0.66 0.619715
Target:  5'- aCCGCccaagUGGC-GCCGgucCAGGcCAAGCUGUGg -3'
miRNA:   3'- -GGCG-----AUCGaUGGC---GUUC-GUUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 3091 0.66 0.619715
Target:  5'- aCGCUGaaUACCGCAA--AGGCUGUGc -3'
miRNA:   3'- gGCGAUcgAUGGCGUUcgUUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 39201 0.67 0.608417
Target:  5'- -aGgaAGCcACgCGCGGGUAGGCCGUu -3'
miRNA:   3'- ggCgaUCGaUG-GCGUUCGUUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 5447 0.67 0.608417
Target:  5'- cCUGCUG---ACCGCAGGUuuGGCCGUc -3'
miRNA:   3'- -GGCGAUcgaUGGCGUUCGu-UCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 10671 0.67 0.590391
Target:  5'- gCCGCgucgugGGCUACCGUgugGAGCuGGaagaugguuccggcaCCGUGg -3'
miRNA:   3'- -GGCGa-----UCGAUGGCG---UUCGuUC---------------GGCAC- -5'
22353 5' -54.9 NC_005045.1 + 41571 0.67 0.574694
Target:  5'- gCCGCccagggcagUGGCUGCUGCGAuCAcAGCgGUGg -3'
miRNA:   3'- -GGCG---------AUCGAUGGCGUUcGU-UCGgCAC- -5'
22353 5' -54.9 NC_005045.1 + 23391 0.67 0.562428
Target:  5'- cCCGUU-GUU-CCGCAAGCAcccgcucAGCCGg- -3'
miRNA:   3'- -GGCGAuCGAuGGCGUUCGU-------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 33711 0.67 0.552445
Target:  5'- aCGCggacGCUACCGUAGGCAGuCCa-- -3'
miRNA:   3'- gGCGau--CGAUGGCGUUCGUUcGGcac -5'
22353 5' -54.9 NC_005045.1 + 17406 0.68 0.541417
Target:  5'- aCUGCggcGGCUGCgGCG-GCugGAGUCGUGg -3'
miRNA:   3'- -GGCGa--UCGAUGgCGUuCG--UUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 32137 0.68 0.541417
Target:  5'- gCUGCUGGCgg-CGCuGGGCAAGUCGg- -3'
miRNA:   3'- -GGCGAUCGaugGCG-UUCGUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 14967 0.68 0.540317
Target:  5'- aCGCUGGgaGCCGUcugAGGCAcugccugcgggacAGCCGg- -3'
miRNA:   3'- gGCGAUCgaUGGCG---UUCGU-------------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 14877 0.68 0.519591
Target:  5'- cCUGCUguaccGGCUGucCCGCAGGCAGuGCCu-- -3'
miRNA:   3'- -GGCGA-----UCGAU--GGCGUUCGUU-CGGcac -5'
22353 5' -54.9 NC_005045.1 + 2067 0.69 0.487533
Target:  5'- gCCGCcaaGGCUcGCCGCGacaaGGCAcGCCGg- -3'
miRNA:   3'- -GGCGa--UCGA-UGGCGU----UCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 15241 0.69 0.466687
Target:  5'- uCCGCgUAGUgGCCGCAgccacguaGGCgGGGCCGUc -3'
miRNA:   3'- -GGCG-AUCGaUGGCGU--------UCG-UUCGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.