Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 30778 | 1.15 | 0.000639 |
Target: 5'- aGCACAAGCCGCAUGUCGAAGGACUCCu -3' miRNA: 3'- -CGUGUUCGGCGUACAGCUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 41861 | 0.66 | 0.837324 |
Target: 5'- cGCACAccucgacgagcugauGGCUGC-UGUCGA--GACUgCCa -3' miRNA: 3'- -CGUGU---------------UCGGCGuACAGCUucCUGA-GG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 26907 | 0.66 | 0.83364 |
Target: 5'- -aACGAGCUggaGUAUGaUCGAcGuGGCUCCg -3' miRNA: 3'- cgUGUUCGG---CGUAC-AGCUuC-CUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 38411 | 0.66 | 0.814691 |
Target: 5'- gGCGCAGgcggagaaucGCCGUAUcgcGcUGGAGGGCUUCa -3' miRNA: 3'- -CGUGUU----------CGGCGUA---CaGCUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 16921 | 0.66 | 0.814691 |
Target: 5'- uGCACAAGCUGCuggaCGAAgcGGACaUCa -3' miRNA: 3'- -CGUGUUCGGCGuacaGCUU--CCUG-AGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 23836 | 0.66 | 0.804901 |
Target: 5'- cCACcaAGGCCGCcaucgGUCGGcugauGGACUCg -3' miRNA: 3'- cGUG--UUCGGCGua---CAGCUu----CCUGAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 17585 | 0.66 | 0.804901 |
Target: 5'- -gGCAAGCUGCcgaugaaucugAUaGUCGAGGGcUUCCc -3' miRNA: 3'- cgUGUUCGGCG-----------UA-CAGCUUCCuGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 22349 | 0.66 | 0.794918 |
Target: 5'- aGCACuacGGUCGCGgccacGUCGA-GGACUa- -3' miRNA: 3'- -CGUGu--UCGGCGUa----CAGCUuCCUGAgg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 17652 | 0.67 | 0.774414 |
Target: 5'- uGCAgUggGCCGCcgagGUC-AAGGGCUaCCu -3' miRNA: 3'- -CGU-GuuCGGCGua--CAGcUUCCUGA-GG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 22159 | 0.72 | 0.454343 |
Target: 5'- cGCGCAGGCCGCAaccUGUcCGGuucGGGCagCg -3' miRNA: 3'- -CGUGUUCGGCGU---ACA-GCUu--CCUGagG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 34258 | 0.72 | 0.48458 |
Target: 5'- aGCAUuGGCCcgcgcagGUAUGcCGggGGACUCg -3' miRNA: 3'- -CGUGuUCGG-------CGUACaGCuuCCUGAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 9362 | 0.69 | 0.630267 |
Target: 5'- aGCAU-AGCCGgGUGcUCGAAGGcaccaaagaaAUUCCa -3' miRNA: 3'- -CGUGuUCGGCgUAC-AGCUUCC----------UGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 40261 | 0.68 | 0.675798 |
Target: 5'- gGCAUggGCCGgGagcGUCGcAAGGGCcgCCc -3' miRNA: 3'- -CGUGuuCGGCgUa--CAGC-UUCCUGa-GG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 31197 | 0.68 | 0.698344 |
Target: 5'- -aGCAAGCCGCGcagUGguUCGccGAGGACaCCg -3' miRNA: 3'- cgUGUUCGGCGU---AC--AGC--UUCCUGaGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 22820 | 0.68 | 0.720614 |
Target: 5'- aGCACAAGCCGgCua-UCGAGacGGGCcuUCCc -3' miRNA: 3'- -CGUGUUCGGC-GuacAGCUU--CCUG--AGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 30660 | 0.66 | 0.810799 |
Target: 5'- cGCACGuuGGCgGCGgcgaucuccaGAAGGGCUUCg -3' miRNA: 3'- -CGUGU--UCGgCGUacag------CUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 29441 | 0.7 | 0.562216 |
Target: 5'- cCACGGGCgGCcugGUCGAuGGACcagUCCa -3' miRNA: 3'- cGUGUUCGgCGua-CAGCUuCCUG---AGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 13965 | 0.7 | 0.607466 |
Target: 5'- cGCACGGGuuGUggGUCGAAcucGGACgUUCu -3' miRNA: 3'- -CGUGUUCggCGuaCAGCUU---CCUG-AGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 24547 | 0.69 | 0.61886 |
Target: 5'- aGCuc-GGCgacuuccuugCGCAUGUCGAAGGAUugggUCCa -3' miRNA: 3'- -CGuguUCG----------GCGUACAGCUUCCUG----AGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 3198 | 0.68 | 0.70952 |
Target: 5'- gGUACGAGguucCUGCaAUGUCGAagauGGGACggCCa -3' miRNA: 3'- -CGUGUUC----GGCG-UACAGCU----UCCUGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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