Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 20984 | 0.68 | 0.731614 |
Target: 5'- aGCACAGGCC-CAUcaguUCGGauGGGGCgCCg -3' miRNA: 3'- -CGUGUUCGGcGUAc---AGCU--UCCUGaGG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 24764 | 0.68 | 0.70952 |
Target: 5'- cGCcCAGGUCGCG-GUCGAugaAGGuCUCg -3' miRNA: 3'- -CGuGUUCGGCGUaCAGCU---UCCuGAGg -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 3198 | 0.68 | 0.70952 |
Target: 5'- gGUACGAGguucCUGCaAUGUCGAagauGGGACggCCa -3' miRNA: 3'- -CGUGUUC----GGCG-UACAGCU----UCCUGa-GG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 24547 | 0.69 | 0.61886 |
Target: 5'- aGCuc-GGCgacuuccuugCGCAUGUCGAAGGAUugggUCCa -3' miRNA: 3'- -CGuguUCG----------GCGUACAGCUUCCUG----AGG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 13965 | 0.7 | 0.607466 |
Target: 5'- cGCACGGGuuGUggGUCGAAcucGGACgUUCu -3' miRNA: 3'- -CGUGUUCggCGuaCAGCUU---CCUG-AGG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 29441 | 0.7 | 0.562216 |
Target: 5'- cCACGGGCgGCcugGUCGAuGGACcagUCCa -3' miRNA: 3'- cGUGUUCGgCGua-CAGCUuCCUG---AGG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 32427 | 0.75 | 0.332867 |
Target: 5'- cUugAAGCCGCGUG-CGgcGGcCUCCu -3' miRNA: 3'- cGugUUCGGCGUACaGCuuCCuGAGG- -5' |
|||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 30660 | 0.66 | 0.810799 |
Target: 5'- cGCACGuuGGCgGCGgcgaucuccaGAAGGGCUUCg -3' miRNA: 3'- -CGUGU--UCGgCGUacag------CUUCCUGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home