Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 32541 | 0.68 | 0.731614 |
Target: 5'- cGCGCcgaAGGCCGUGUcacGUCGcGGGAUggCCg -3' miRNA: 3'- -CGUG---UUCGGCGUA---CAGCuUCCUGa-GG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 34258 | 0.72 | 0.48458 |
Target: 5'- aGCAUuGGCCcgcgcagGUAUGcCGggGGACUCg -3' miRNA: 3'- -CGUGuUCGG-------CGUACaGCuuCCUGAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 38411 | 0.66 | 0.814691 |
Target: 5'- gGCGCAGgcggagaaucGCCGUAUcgcGcUGGAGGGCUUCa -3' miRNA: 3'- -CGUGUU----------CGGCGUA---CaGCUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 38458 | 0.66 | 0.808841 |
Target: 5'- uGCGCcuGCCGCAUcuccucgcggaggcgGUCGAuguugauGGugUCg -3' miRNA: 3'- -CGUGuuCGGCGUA---------------CAGCUu------CCugAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 39491 | 0.68 | 0.731614 |
Target: 5'- cGCGCAgcuugAGCUGCAUacgcugcucGUCGGcgaggcuGGugUCCa -3' miRNA: 3'- -CGUGU-----UCGGCGUA---------CAGCUu------CCugAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 40004 | 0.68 | 0.731614 |
Target: 5'- uGCAUgauGGGCCGCAgggUGUCGAugauacgacGCUCCu -3' miRNA: 3'- -CGUG---UUCGGCGU---ACAGCUucc------UGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 40261 | 0.68 | 0.675798 |
Target: 5'- gGCAUggGCCGgGagcGUCGcAAGGGCcgCCc -3' miRNA: 3'- -CGUGuuCGGCgUa--CAGC-UUCCUGa-GG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 41861 | 0.66 | 0.837324 |
Target: 5'- cGCACAccucgacgagcugauGGCUGC-UGUCGA--GACUgCCa -3' miRNA: 3'- -CGUGU---------------UCGGCGuACAGCUucCUGA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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