Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22359 | 3' | -52.2 | NC_005045.1 | + | 23836 | 0.66 | 0.804901 |
Target: 5'- cCACcaAGGCCGCcaucgGUCGGcugauGGACUCg -3' miRNA: 3'- cGUG--UUCGGCGua---CAGCUu----CCUGAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 17585 | 0.66 | 0.804901 |
Target: 5'- -gGCAAGCUGCcgaugaaucugAUaGUCGAGGGcUUCCc -3' miRNA: 3'- cgUGUUCGGCG-----------UA-CAGCUUCCuGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 38458 | 0.66 | 0.808841 |
Target: 5'- uGCGCcuGCCGCAUcuccucgcggaggcgGUCGAuguugauGGugUCg -3' miRNA: 3'- -CGUGuuCGGCGUA---------------CAGCUu------CCugAGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 30660 | 0.66 | 0.810799 |
Target: 5'- cGCACGuuGGCgGCGgcgaucuccaGAAGGGCUUCg -3' miRNA: 3'- -CGUGU--UCGgCGUacag------CUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 38411 | 0.66 | 0.814691 |
Target: 5'- gGCGCAGgcggagaaucGCCGUAUcgcGcUGGAGGGCUUCa -3' miRNA: 3'- -CGUGUU----------CGGCGUA---CaGCUUCCUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 16921 | 0.66 | 0.814691 |
Target: 5'- uGCACAAGCUGCuggaCGAAgcGGACaUCa -3' miRNA: 3'- -CGUGUUCGGCGuacaGCUU--CCUG-AGg -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 26907 | 0.66 | 0.83364 |
Target: 5'- -aACGAGCUggaGUAUGaUCGAcGuGGCUCCg -3' miRNA: 3'- cgUGUUCGG---CGUAC-AGCUuC-CUGAGG- -5' |
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22359 | 3' | -52.2 | NC_005045.1 | + | 41861 | 0.66 | 0.837324 |
Target: 5'- cGCACAccucgacgagcugauGGCUGC-UGUCGA--GACUgCCa -3' miRNA: 3'- -CGUGU---------------UCGGCGuACAGCUucCUGA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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