miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22362 5' -57.2 NC_005045.1 + 32779 1.08 0.000541
Target:  5'- aCCAACCCGGUGACCGUGCUCCACGAAg -3'
miRNA:   3'- -GGUUGGGCCACUGGCACGAGGUGCUU- -5'
22362 5' -57.2 NC_005045.1 + 39854 0.66 0.550806
Target:  5'- aUCGACCCGGauACCGgcaaGCUCCguuAUGAGg -3'
miRNA:   3'- -GGUUGGGCCacUGGCa---CGAGG---UGCUU- -5'
22362 5' -57.2 NC_005045.1 + 32065 0.68 0.416294
Target:  5'- gCAGCCCuggcaguugaugcGGUuacuuucggcgcuGGCCGUGCUCUGCGGc -3'
miRNA:   3'- gGUUGGG-------------CCA-------------CUGGCACGAGGUGCUu -5'
22362 5' -57.2 NC_005045.1 + 28417 0.69 0.390389
Target:  5'- aCAACCUGGgcGCCGcUGC-CCGCGAu -3'
miRNA:   3'- gGUUGGGCCacUGGC-ACGaGGUGCUu -5'
22362 5' -57.2 NC_005045.1 + 33240 0.69 0.381396
Target:  5'- gCCAACaagggcgcuCCGGUGACCGaggagGCUagCCugGAGa -3'
miRNA:   3'- -GGUUG---------GGCCACUGGCa----CGA--GGugCUU- -5'
22362 5' -57.2 NC_005045.1 + 23359 0.69 0.355258
Target:  5'- aCCAG-CCGGUGGCgGUGCcugCCGCa-- -3'
miRNA:   3'- -GGUUgGGCCACUGgCACGa--GGUGcuu -5'
22362 5' -57.2 NC_005045.1 + 41140 0.7 0.322414
Target:  5'- cCCAgcGCCaggaGGUgGACCGUGC-CCugGAc -3'
miRNA:   3'- -GGU--UGGg---CCA-CUGGCACGaGGugCUu -5'
22362 5' -57.2 NC_005045.1 + 31744 0.72 0.237714
Target:  5'- gCCGGCCCu-UGACCGUGCUuCCGCa-- -3'
miRNA:   3'- -GGUUGGGccACUGGCACGA-GGUGcuu -5'
22362 5' -57.2 NC_005045.1 + 18002 0.69 0.34683
Target:  5'- uUCGGCCagGGUGACCGccUGUUCCAgGGu -3'
miRNA:   3'- -GGUUGGg-CCACUGGC--ACGAGGUgCUu -5'
22362 5' -57.2 NC_005045.1 + 12245 0.67 0.467068
Target:  5'- gCCAGCUCGGUGAUgGUGggCCAg--- -3'
miRNA:   3'- -GGUUGGGCCACUGgCACgaGGUgcuu -5'
22362 5' -57.2 NC_005045.1 + 33961 0.66 0.518738
Target:  5'- gUCAGCCCGGUccaGGCCaggGaugCCACGGAa -3'
miRNA:   3'- -GGUUGGGCCA---CUGGca-Cga-GGUGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.