miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22363 5' -57.3 NC_005045.1 + 33599 1.08 0.000518
Target:  5'- gCUCAACGAGCAGGUCACGCGGGAGCUg -3'
miRNA:   3'- -GAGUUGCUCGUCCAGUGCGCCCUCGA- -5'
22363 5' -57.3 NC_005045.1 + 29027 0.67 0.454199
Target:  5'- -aCAACGugcAGCAGGaaguUCuGCGCGGuGAGCg -3'
miRNA:   3'- gaGUUGC---UCGUCC----AG-UGCGCC-CUCGa -5'
22363 5' -57.3 NC_005045.1 + 7788 0.67 0.484639
Target:  5'- aUCAAUGGGCAGGcCA--UGGGuGCUg -3'
miRNA:   3'- gAGUUGCUCGUCCaGUgcGCCCuCGA- -5'
22363 5' -57.3 NC_005045.1 + 21528 0.66 0.516021
Target:  5'- aCUCGACGAcGCcGGaaUCAgGCGGGcacaGGCg -3'
miRNA:   3'- -GAGUUGCU-CGuCC--AGUgCGCCC----UCGa -5'
22363 5' -57.3 NC_005045.1 + 19473 0.66 0.53739
Target:  5'- gCUCuGCGccaucGCAGGUC-UGCuGGAGCUg -3'
miRNA:   3'- -GAGuUGCu----CGUCCAGuGCGcCCUCGA- -5'
22363 5' -57.3 NC_005045.1 + 39508 0.72 0.228996
Target:  5'- gUCAAUGAacaGCAGGUCGCGCaGcuuGAGCUg -3'
miRNA:   3'- gAGUUGCU---CGUCCAGUGCGcC---CUCGA- -5'
22363 5' -57.3 NC_005045.1 + 32846 0.69 0.327546
Target:  5'- uUCGugGAGCAcGGUCAC-CGGGuuGGUg -3'
miRNA:   3'- gAGUugCUCGU-CCAGUGcGCCC--UCGa -5'
22363 5' -57.3 NC_005045.1 + 7292 0.67 0.444284
Target:  5'- cCUgGAgGuGcCAGGUCAUGCGGGcGCc -3'
miRNA:   3'- -GAgUUgCuC-GUCCAGUGCGCCCuCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.