miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 5' -58.7 NC_005045.1 + 33724 1.09 0.00033
Target:  5'- uUCACGGUCUGAUGGGCCAACGGGCCAg -3'
miRNA:   3'- -AGUGCCAGACUACCCGGUUGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 33936 0.73 0.155794
Target:  5'- cCACGGaacacugccucgCUGAUGGcUCGGCGGGCCAg -3'
miRNA:   3'- aGUGCCa-----------GACUACCcGGUUGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 6031 0.71 0.234138
Target:  5'- aCcCGG-CUGGUGgagguaGGUCAACGGGCCGg -3'
miRNA:   3'- aGuGCCaGACUAC------CCGGUUGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 10346 0.7 0.259648
Target:  5'- cCuuGGUCaGcgGGGUCuuGCGGGCCAu -3'
miRNA:   3'- aGugCCAGaCuaCCCGGu-UGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 7280 0.67 0.366714
Target:  5'- ---aGGUCaUGcgGGcGCCGuagGCGGGCCGc -3'
miRNA:   3'- agugCCAG-ACuaCC-CGGU---UGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 3948 0.67 0.384287
Target:  5'- cCACGGaCcgGAUGuGCC-ACGGGCCu -3'
miRNA:   3'- aGUGCCaGa-CUACcCGGuUGCCCGGu -5'
22364 5' -58.7 NC_005045.1 + 27616 0.66 0.440231
Target:  5'- -gAUGGuUCUGAUccagaaGGGCCAGgagaucgcccUGGGCCGu -3'
miRNA:   3'- agUGCC-AGACUA------CCCGGUU----------GCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 2648 0.66 0.430585
Target:  5'- cCACGGgcugUUGGUGGcGCCGACGagaucGGUCu -3'
miRNA:   3'- aGUGCCa---GACUACC-CGGUUGC-----CCGGu -5'
22364 5' -58.7 NC_005045.1 + 32940 0.66 0.440231
Target:  5'- cCAgGGUCUGcauGGCC--UGGGCCAc -3'
miRNA:   3'- aGUgCCAGACuacCCGGuuGCCCGGU- -5'
22364 5' -58.7 NC_005045.1 + 3474 0.66 0.449999
Target:  5'- aCACGaaggcacagccGcCUGAUGGGCUGACGGcuaugaugaGCCAc -3'
miRNA:   3'- aGUGC-----------CaGACUACCCGGUUGCC---------CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.