miRNA: 3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5'
miRNA: 3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5'
miRNA: 3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5'
miRNA: 3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5'
Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22372 | 5' | -51.3 | NC_005045.1 | + | 33450 | 0.69 | 0.690542 |
|
Target: 5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3' miRNA: 3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5' |
|||||||
| 22372 | 5' | -51.3 | NC_005045.1 | + | 35506 | 0.69 | 0.701898 |
|
Target: 5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3' miRNA: 3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5' |
|||||||
| 22372 | 5' | -51.3 | NC_005045.1 | + | 12718 | 0.69 | 0.701898 |
|
Target: 5'- -----gGGCGGCUGGACgACAGACgCGUu -3' miRNA: 3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5' |
|||||||
| 22372 | 5' | -51.3 | NC_005045.1 | + | 23898 | 0.78 | 0.235406 |
|
Target: 5'- cGAcCGAUGGCGGCCuuGGugGCAGGguCCGCg -3' miRNA: 3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home