miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 31206 0.69 0.701898
Target:  5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3'
miRNA:   3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 2276 0.68 0.735466
Target:  5'- aGCAGcGGCGGCCAGguaGC-CGGcACUGCg -3'
miRNA:   3'- cUGUUaUUGCCGGUC---UGuGUC-UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 14217 0.68 0.746444
Target:  5'- uGCAGaAGCGGCCcauGGCGguGcCCGCc -3'
miRNA:   3'- cUGUUaUUGCCGGu--CUGUguCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 21177 0.67 0.788952
Target:  5'- cACugu-GCGGUCAcGCACGGGCCGa -3'
miRNA:   3'- cUGuuauUGCCGGUcUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 7761 0.67 0.788952
Target:  5'- cGGCAGUAGCGcGCCcaAUcCAGcCCGCg -3'
miRNA:   3'- -CUGUUAUUGC-CGGucUGuGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 41258 0.67 0.799162
Target:  5'- aACGAcAGCaG-CAGGCACAGGCCGg -3'
miRNA:   3'- cUGUUaUUGcCgGUCUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 3115 0.67 0.80918
Target:  5'- uGACAgGUGACaugcCCGGACAgCGGACUGCc -3'
miRNA:   3'- -CUGU-UAUUGcc--GGUCUGU-GUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 19599 0.67 0.816071
Target:  5'- gGACGAUGAagccgcuuCGGuaCCccucgggauuccggAGGCAUAGGCCGCg -3'
miRNA:   3'- -CUGUUAUU--------GCC--GG--------------UCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 24037 0.66 0.837961
Target:  5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3'
miRNA:   3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 26241 0.69 0.713179
Target:  5'- uGGCGAUGAacaggucauCGGCCAccGugGCGGcCCGUa -3'
miRNA:   3'- -CUGUUAUU---------GCCGGU--CugUGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12718 0.69 0.701898
Target:  5'- -----gGGCGGCUGGACgACAGACgCGUu -3'
miRNA:   3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 35506 0.69 0.701898
Target:  5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3'
miRNA:   3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 8791 0.66 0.863754
Target:  5'- cACAggAugGGCCGGcCugGGucgaaguACCGCu -3'
miRNA:   3'- cUGUuaUugCCGGUCuGugUC-------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12560 0.76 0.332089
Target:  5'- uGCAGcu-CGGCCAGGCGCAucaacagcuuGGCCGCc -3'
miRNA:   3'- cUGUUauuGCCGGUCUGUGU----------CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9898 0.75 0.367182
Target:  5'- uGCAGguACGcacCCAGGCGCGGGCCGCc -3'
miRNA:   3'- cUGUUauUGCc--GGUCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 4548 0.75 0.367182
Target:  5'- cGCAGc-ACGGUgGGACGCGGACCGg -3'
miRNA:   3'- cUGUUauUGCCGgUCUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 27355 0.73 0.47596
Target:  5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3'
miRNA:   3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 22144 0.72 0.485569
Target:  5'- gGACGAUAuccauccaGCGGCCAGuCGCAucucggcGcACCGCg -3'
miRNA:   3'- -CUGUUAU--------UGCCGGUCuGUGU-------C-UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 5823 0.7 0.633084
Target:  5'- cGCGu---CGGCCuGGCACAagcuGGCCGCu -3'
miRNA:   3'- cUGUuauuGCCGGuCUGUGU----CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 33450 0.69 0.690542
Target:  5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3'
miRNA:   3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.