Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22372 | 5' | -51.3 | NC_005045.1 | + | 23044 | 0.68 | 0.746444 |
Target: 5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3' miRNA: 3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 29981 | 0.68 | 0.746444 |
Target: 5'- gGACAAgaugcaGGCGGCCAacGGCucaagccugACGGAUCGCc -3' miRNA: 3'- -CUGUUa-----UUGCCGGU--CUG---------UGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 14120 | 0.68 | 0.754054 |
Target: 5'- cGGCGGUGGCGGCggUcgcaucuucccggcGGGCACcgccauGGGCCGCu -3' miRNA: 3'- -CUGUUAUUGCCG--G--------------UCUGUG------UCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 26241 | 0.69 | 0.713179 |
Target: 5'- uGGCGAUGAacaggucauCGGCCAccGugGCGGcCCGUa -3' miRNA: 3'- -CUGUUAUU---------GCCGGU--CugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 12845 | 0.69 | 0.679124 |
Target: 5'- uGGCGAaacUGAUGGCCGG-CACuGACaUGCa -3' miRNA: 3'- -CUGUU---AUUGCCGGUCuGUGuCUG-GCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 35506 | 0.69 | 0.701898 |
Target: 5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3' miRNA: 3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 33450 | 0.69 | 0.690542 |
Target: 5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3' miRNA: 3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 12718 | 0.69 | 0.701898 |
Target: 5'- -----gGGCGGCUGGACgACAGACgCGUu -3' miRNA: 3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 7249 | 0.69 | 0.713179 |
Target: 5'- gGACAuguucgaGGCCcGAgGCGGGCUGCg -3' miRNA: 3'- -CUGUuauug--CCGGuCUgUGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 31206 | 0.69 | 0.701898 |
Target: 5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3' miRNA: 3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 18819 | 0.69 | 0.690542 |
Target: 5'- aGCGGgcACGG-CAGGCGCAGcuCCGCc -3' miRNA: 3'- cUGUUauUGCCgGUCUGUGUCu-GGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 5823 | 0.7 | 0.633084 |
Target: 5'- cGCGu---CGGCCuGGCACAagcuGGCCGCu -3' miRNA: 3'- cUGUuauuGCCGGuCUGUGU----CUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 22512 | 0.7 | 0.644625 |
Target: 5'- gGGCGAUuACGuGCCAGgugGCGCGGaaGCCGUc -3' miRNA: 3'- -CUGUUAuUGC-CGGUC---UGUGUC--UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 30546 | 0.71 | 0.541615 |
Target: 5'- cGCAAgcauGCGGgucugcucaCCAgcGACACGGGCCGCg -3' miRNA: 3'- cUGUUau--UGCC---------GGU--CUGUGUCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 37989 | 0.71 | 0.587022 |
Target: 5'- aGACGAUcGGCGGCCAGAgGgCAGcGCCuggGCg -3' miRNA: 3'- -CUGUUA-UUGCCGGUCUgU-GUC-UGG---CG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 22144 | 0.72 | 0.485569 |
Target: 5'- gGACGAUAuccauccaGCGGCCAGuCGCAucucggcGcACCGCg -3' miRNA: 3'- -CUGUUAU--------UGCCGGUCuGUGU-------C-UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 27355 | 0.73 | 0.47596 |
Target: 5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3' miRNA: 3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 5745 | 0.74 | 0.42441 |
Target: 5'- aGGCGcggGUAGCGGCCAGcuuguGC-CAGGCCGa -3' miRNA: 3'- -CUGU---UAUUGCCGGUC-----UGuGUCUGGCg -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 30872 | 0.74 | 0.414505 |
Target: 5'- cGACGAgAACGGUguGGCccuGGACCGCa -3' miRNA: 3'- -CUGUUaUUGCCGguCUGug-UCUGGCG- -5' |
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22372 | 5' | -51.3 | NC_005045.1 | + | 4548 | 0.75 | 0.367182 |
Target: 5'- cGCAGc-ACGGUgGGACGCGGACCGg -3' miRNA: 3'- cUGUUauUGCCGgUCUGUGUCUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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