miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 19599 0.67 0.816071
Target:  5'- gGACGAUGAagccgcuuCGGuaCCccucgggauuccggAGGCAUAGGCCGCg -3'
miRNA:   3'- -CUGUUAUU--------GCC--GG--------------UCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 21177 0.67 0.788952
Target:  5'- cACugu-GCGGUCAcGCACGGGCCGa -3'
miRNA:   3'- cUGuuauUGCCGGUcUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 22144 0.72 0.485569
Target:  5'- gGACGAUAuccauccaGCGGCCAGuCGCAucucggcGcACCGCg -3'
miRNA:   3'- -CUGUUAU--------UGCCGGUCuGUGU-------C-UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 22512 0.7 0.644625
Target:  5'- gGGCGAUuACGuGCCAGgugGCGCGGaaGCCGUc -3'
miRNA:   3'- -CUGUUAuUGC-CGGUC---UGUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 23044 0.68 0.746444
Target:  5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3'
miRNA:   3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 23898 0.78 0.235406
Target:  5'- cGAcCGAUGGCGGCCuuGGugGCAGGguCCGCg -3'
miRNA:   3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5'
22372 5' -51.3 NC_005045.1 + 24037 0.66 0.837961
Target:  5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3'
miRNA:   3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 24799 0.66 0.855978
Target:  5'- cGACAuc-GgGGUCAGGCccucggagUAGACCGCa -3'
miRNA:   3'- -CUGUuauUgCCGGUCUGu-------GUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 25661 0.68 0.768006
Target:  5'- cACGAgauUGGaCCGGACG-AGACCGCc -3'
miRNA:   3'- cUGUUauuGCC-GGUCUGUgUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 26241 0.69 0.713179
Target:  5'- uGGCGAUGAacaggucauCGGCCAccGugGCGGcCCGUa -3'
miRNA:   3'- -CUGUUAUU---------GCCGGU--CugUGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 27355 0.73 0.47596
Target:  5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3'
miRNA:   3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 28816 0.66 0.855978
Target:  5'- cGACAucaGAcCGGCCAccaGCGgGGACCGUu -3'
miRNA:   3'- -CUGUua-UU-GCCGGUc--UGUgUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 29981 0.68 0.746444
Target:  5'- gGACAAgaugcaGGCGGCCAacGGCucaagccugACGGAUCGCc -3'
miRNA:   3'- -CUGUUa-----UUGCCGGU--CUG---------UGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 30546 0.71 0.541615
Target:  5'- cGCAAgcauGCGGgucugcucaCCAgcGACACGGGCCGCg -3'
miRNA:   3'- cUGUUau--UGCC---------GGU--CUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 30872 0.74 0.414505
Target:  5'- cGACGAgAACGGUguGGCccuGGACCGCa -3'
miRNA:   3'- -CUGUUaUUGCCGguCUGug-UCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 31206 0.69 0.701898
Target:  5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3'
miRNA:   3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 32072 0.67 0.788952
Target:  5'- uGGCAGUugauGCGGUUAcuuucGGCGCuGGCCGUg -3'
miRNA:   3'- -CUGUUAu---UGCCGGU-----CUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 32573 0.66 0.855101
Target:  5'- gGACAGcuuACGGCCuGACaggcuguGCAGcUCGCg -3'
miRNA:   3'- -CUGUUau-UGCCGGuCUG-------UGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 33450 0.69 0.690542
Target:  5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3'
miRNA:   3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5'
22372 5' -51.3 NC_005045.1 + 35506 0.69 0.701898
Target:  5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3'
miRNA:   3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.