miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22373 5' -63.1 NC_005045.1 + 38847 1.09 0.000135
Target:  5'- cGCCCCGAGGCCCGCAUGGGUGACCGUa -3'
miRNA:   3'- -CGGGGCUCCGGGCGUACCCACUGGCA- -5'
22373 5' -63.1 NC_005045.1 + 9821 0.73 0.085523
Target:  5'- aCCCCGAaggcGGCCCGCGccUGGGUGcguACCu- -3'
miRNA:   3'- cGGGGCU----CCGGGCGU--ACCCAC---UGGca -5'
22373 5' -63.1 NC_005045.1 + 32426 0.69 0.181844
Target:  5'- uGUCCCGuauuAGcGCCCGCGUGGagcaGGCCGa -3'
miRNA:   3'- -CGGGGC----UC-CGGGCGUACCca--CUGGCa -5'
22373 5' -63.1 NC_005045.1 + 14746 0.68 0.196571
Target:  5'- uCCCCGGcucGGCCCuGCAcauccugcUGGGUGGCgGc -3'
miRNA:   3'- cGGGGCU---CCGGG-CGU--------ACCCACUGgCa -5'
22373 5' -63.1 NC_005045.1 + 34549 0.67 0.259709
Target:  5'- gGCCaugCUGAacuCCCGCAUGGGUGACUu- -3'
miRNA:   3'- -CGG---GGCUcc-GGGCGUACCCACUGGca -5'
22373 5' -63.1 NC_005045.1 + 27331 0.66 0.279585
Target:  5'- uGCCCUGgguuucauGGGCCUGCAUGaGaUGGCCc- -3'
miRNA:   3'- -CGGGGC--------UCCGGGCGUAC-CcACUGGca -5'
22373 5' -63.1 NC_005045.1 + 8683 0.66 0.293497
Target:  5'- aGCaCCGAGGCCCcgGCGUGGa-GGCCc- -3'
miRNA:   3'- -CGgGGCUCCGGG--CGUACCcaCUGGca -5'
22373 5' -63.1 NC_005045.1 + 18109 0.66 0.293497
Target:  5'- cGCCCCGAcaagGGCCUcuuCGUGGGcGAUCu- -3'
miRNA:   3'- -CGGGGCU----CCGGGc--GUACCCaCUGGca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.