Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 38847 | 1.09 | 0.000135 |
Target: 5'- cGCCCCGAGGCCCGCAUGGGUGACCGUa -3' miRNA: 3'- -CGGGGCUCCGGGCGUACCCACUGGCA- -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 9821 | 0.73 | 0.085523 |
Target: 5'- aCCCCGAaggcGGCCCGCGccUGGGUGcguACCu- -3' miRNA: 3'- cGGGGCU----CCGGGCGU--ACCCAC---UGGca -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 32426 | 0.69 | 0.181844 |
Target: 5'- uGUCCCGuauuAGcGCCCGCGUGGagcaGGCCGa -3' miRNA: 3'- -CGGGGC----UC-CGGGCGUACCca--CUGGCa -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 14746 | 0.68 | 0.196571 |
Target: 5'- uCCCCGGcucGGCCCuGCAcauccugcUGGGUGGCgGc -3' miRNA: 3'- cGGGGCU---CCGGG-CGU--------ACCCACUGgCa -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 34549 | 0.67 | 0.259709 |
Target: 5'- gGCCaugCUGAacuCCCGCAUGGGUGACUu- -3' miRNA: 3'- -CGG---GGCUcc-GGGCGUACCCACUGGca -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 27331 | 0.66 | 0.279585 |
Target: 5'- uGCCCUGgguuucauGGGCCUGCAUGaGaUGGCCc- -3' miRNA: 3'- -CGGGGC--------UCCGGGCGUAC-CcACUGGca -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 8683 | 0.66 | 0.293497 |
Target: 5'- aGCaCCGAGGCCCcgGCGUGGa-GGCCc- -3' miRNA: 3'- -CGgGGCUCCGGG--CGUACCcaCUGGca -5' |
|||||||
22373 | 5' | -63.1 | NC_005045.1 | + | 18109 | 0.66 | 0.293497 |
Target: 5'- cGCCCCGAcaagGGCCUcuuCGUGGGcGAUCu- -3' miRNA: 3'- -CGGGGCU----CCGGGc--GUACCCaCUGGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home