miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22375 3' -57.3 NC_005045.1 + 15546 0.66 0.562281
Target:  5'- cAUGGCGuaGGCGuccaucaucauGCcGUCGUcgGCCu -3'
miRNA:   3'- -UGCCGCcgCUGCu----------CGaCAGCAuaCGG- -5'
22375 3' -57.3 NC_005045.1 + 41505 0.66 0.530119
Target:  5'- uCGuGUagGGCGAUGcGGUUGUCG-GUGCCg -3'
miRNA:   3'- uGC-CG--CCGCUGC-UCGACAGCaUACGG- -5'
22375 3' -57.3 NC_005045.1 + 3415 0.66 0.519544
Target:  5'- uCGGCGGCugcauGAUGaAGCgcaUGUUGcGUGCCu -3'
miRNA:   3'- uGCCGCCG-----CUGC-UCG---ACAGCaUACGG- -5'
22375 3' -57.3 NC_005045.1 + 28586 0.66 0.540771
Target:  5'- uGCGGUGGCccuggauauCGAGCgggagGUCGgcgagGCCc -3'
miRNA:   3'- -UGCCGCCGcu-------GCUCGa----CAGCaua--CGG- -5'
22375 3' -57.3 NC_005045.1 + 18897 0.66 0.540771
Target:  5'- cUGGCccaGGUGGCgGAGCUG-CGccUGCCg -3'
miRNA:   3'- uGCCG---CCGCUG-CUCGACaGCauACGG- -5'
22375 3' -57.3 NC_005045.1 + 21641 0.67 0.509054
Target:  5'- gACGGCaGCGugGAGCaG-CGg--GCUa -3'
miRNA:   3'- -UGCCGcCGCugCUCGaCaGCauaCGG- -5'
22375 3' -57.3 NC_005045.1 + 6263 0.67 0.458062
Target:  5'- cCGGCGGCGucgUGGGCa---GUGUGCUg -3'
miRNA:   3'- uGCCGCCGCu--GCUCGacagCAUACGG- -5'
22375 3' -57.3 NC_005045.1 + 9663 0.67 0.498653
Target:  5'- -gGGCGGUaucuucaagGGCGuGCUGucccUCGUAggcUGCCg -3'
miRNA:   3'- ugCCGCCG---------CUGCuCGAC----AGCAU---ACGG- -5'
22375 3' -57.3 NC_005045.1 + 6464 0.67 0.509054
Target:  5'- gACGGCaagcgGGCGACcugggacaAGgUGgcggCGUGUGCCg -3'
miRNA:   3'- -UGCCG-----CCGCUGc-------UCgACa---GCAUACGG- -5'
22375 3' -57.3 NC_005045.1 + 39001 0.68 0.438437
Target:  5'- gGCGGCGGUGAuccCGAuGCaGUUGaUAgagGCCg -3'
miRNA:   3'- -UGCCGCCGCU---GCU-CGaCAGC-AUa--CGG- -5'
22375 3' -57.3 NC_005045.1 + 12019 0.68 0.400684
Target:  5'- uACGGUGGCGAgGuGCgguacaaggGcCGgGUGCCg -3'
miRNA:   3'- -UGCCGCCGCUgCuCGa--------CaGCaUACGG- -5'
22375 3' -57.3 NC_005045.1 + 12639 0.68 0.428808
Target:  5'- gACGGCGaCGGCGAcaacgcGuCUGUCGUccaGCCg -3'
miRNA:   3'- -UGCCGCcGCUGCU------C-GACAGCAua-CGG- -5'
22375 3' -57.3 NC_005045.1 + 35495 0.69 0.382601
Target:  5'- cCGGUGGCGGCu-GCgggGUCGUc-GCCg -3'
miRNA:   3'- uGCCGCCGCUGcuCGa--CAGCAuaCGG- -5'
22375 3' -57.3 NC_005045.1 + 30652 0.69 0.348099
Target:  5'- gGCGGCGGCGAUcuccagaaGGGCU-UCGcg-GCCc -3'
miRNA:   3'- -UGCCGCCGCUG--------CUCGAcAGCauaCGG- -5'
22375 3' -57.3 NC_005045.1 + 37444 0.69 0.356513
Target:  5'- cCGGCGGCGGCGcucaaguaGGCgGUCuUGgucugGCCg -3'
miRNA:   3'- uGCCGCCGCUGC--------UCGaCAGcAUa----CGG- -5'
22375 3' -57.3 NC_005045.1 + 31253 0.7 0.331701
Target:  5'- -aGGuUGGcCGACGAGCUGggCGUuacgaacaAUGCCu -3'
miRNA:   3'- ugCC-GCC-GCUGCUCGACa-GCA--------UACGG- -5'
22375 3' -57.3 NC_005045.1 + 17408 0.71 0.285958
Target:  5'- uGCGGCGGCuGCGgcGGCUggaGUCGUggGCg -3'
miRNA:   3'- -UGCCGCCGcUGC--UCGA---CAGCAuaCGg -5'
22375 3' -57.3 NC_005045.1 + 18271 0.71 0.285958
Target:  5'- cAUGGCGcuGCGGgcUGGGCUGUCG-AUGCUc -3'
miRNA:   3'- -UGCCGC--CGCU--GCUCGACAGCaUACGG- -5'
22375 3' -57.3 NC_005045.1 + 32484 0.72 0.232901
Target:  5'- cACGGCcuucGGCGACGAGCUGcacagccUGUcagGCCg -3'
miRNA:   3'- -UGCCG----CCGCUGCUCGACa------GCAua-CGG- -5'
22375 3' -57.3 NC_005045.1 + 3681 0.72 0.245336
Target:  5'- gUGGcCGGUGACGAuGCUGUCGgcUaCCa -3'
miRNA:   3'- uGCC-GCCGCUGCU-CGACAGCauAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.