miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22380 5' -62.8 NC_005045.1 + 4751 0.66 0.275692
Target:  5'- aGCUUggcGCCCGgGGuagcaGCGGUGGUGGUUu -3'
miRNA:   3'- gUGGGa--CGGGCaCC-----UGCCGCCACCAA- -5'
22380 5' -62.8 NC_005045.1 + 9607 0.67 0.237113
Target:  5'- gACCCgcgcuucGUCCG-GGACGGUGGcUGGa- -3'
miRNA:   3'- gUGGGa------CGGGCaCCUGCCGCC-ACCaa -5'
22380 5' -62.8 NC_005045.1 + 41512 0.68 0.203159
Target:  5'- aGCCaCUGCCC-UGGGCGGCGaG-GGc- -3'
miRNA:   3'- gUGG-GACGGGcACCUGCCGC-CaCCaa -5'
22380 5' -62.8 NC_005045.1 + 27427 0.68 0.187818
Target:  5'- ---gCUGUCCGUGGACGGCGacgGGg- -3'
miRNA:   3'- guggGACGGGCACCUGCCGCca-CCaa -5'
22380 5' -62.8 NC_005045.1 + 10149 0.69 0.173506
Target:  5'- -uCCCUGCCC-UGGACGGCcuGGaGGa- -3'
miRNA:   3'- guGGGACGGGcACCUGCCG--CCaCCaa -5'
22380 5' -62.8 NC_005045.1 + 39019 0.7 0.147773
Target:  5'- aGCCCgguaGCCC-UGGAgGGCGGcGGUg -3'
miRNA:   3'- gUGGGa---CGGGcACCUgCCGCCaCCAa -5'
22380 5' -62.8 NC_005045.1 + 41586 1.04 0.000281
Target:  5'- aCACCCUGCCCGUGGACGGCGGUGGUUc -3'
miRNA:   3'- -GUGGGACGGGCACCUGCCGCCACCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.