miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22399 5' -61 NC_005056.1 + 5744 1.01 0.000481
Target:  5'- cAGCGC-CCGGCGGCAUCACCAGCGUCa -3'
miRNA:   3'- -UCGCGuGGCCGCCGUAGUGGUCGCAG- -5'
22399 5' -61 NC_005056.1 + 5487 0.74 0.067642
Target:  5'- cAGCGCACCGGCaaUAUCGCCGGUaUCc -3'
miRNA:   3'- -UCGCGUGGCCGccGUAGUGGUCGcAG- -5'
22399 5' -61 NC_005056.1 + 18825 0.72 0.093012
Target:  5'- uGUGCACCGGCuGCAUCAUCcgccgaGGCGg- -3'
miRNA:   3'- uCGCGUGGCCGcCGUAGUGG------UCGCag -5'
22399 5' -61 NC_005056.1 + 4367 0.71 0.116882
Target:  5'- cGGUGcCACCGGCGGUGUCggugguGCUGGCGa- -3'
miRNA:   3'- -UCGC-GUGGCCGCCGUAG------UGGUCGCag -5'
22399 5' -61 NC_005056.1 + 17726 0.71 0.12024
Target:  5'- cAGCGUcCCGGCuugGGUuUCAUCAGCGUg -3'
miRNA:   3'- -UCGCGuGGCCG---CCGuAGUGGUCGCAg -5'
22399 5' -61 NC_005056.1 + 4939 0.69 0.168097
Target:  5'- cGCGUACCGcCGGCAggUUACCGauGCGUUu -3'
miRNA:   3'- uCGCGUGGCcGCCGU--AGUGGU--CGCAG- -5'
22399 5' -61 NC_005056.1 + 16487 0.68 0.192673
Target:  5'- cAGCGCACgGGCGGUggCAUacgCGGUGg- -3'
miRNA:   3'- -UCGCGUGgCCGCCGuaGUG---GUCGCag -5'
22399 5' -61 NC_005056.1 + 12530 0.68 0.203357
Target:  5'- cGCGCGgUGGUGGCGUCcUguGCGg- -3'
miRNA:   3'- uCGCGUgGCCGCCGUAGuGguCGCag -5'
22399 5' -61 NC_005056.1 + 8339 0.68 0.203357
Target:  5'- gGGCagGCGuuGGCGacaAUCACUGGCGUCu -3'
miRNA:   3'- -UCG--CGUggCCGCcg-UAGUGGUCGCAG- -5'
22399 5' -61 NC_005056.1 + 4033 0.68 0.208889
Target:  5'- gGGCGUcaccgccaccGCCGGUGGCuuugCugCGGCGc- -3'
miRNA:   3'- -UCGCG----------UGGCCGCCGua--GugGUCGCag -5'
22399 5' -61 NC_005056.1 + 8532 0.68 0.21455
Target:  5'- --aGCACCGuGaCGGCAUCAgUCAGCGcCc -3'
miRNA:   3'- ucgCGUGGC-C-GCCGUAGU-GGUCGCaG- -5'
22399 5' -61 NC_005056.1 + 8293 0.67 0.226268
Target:  5'- uGGUGCaACCGGCGcacaGCAUCaggcagGCCAGCa-- -3'
miRNA:   3'- -UCGCG-UGGCCGC----CGUAG------UGGUCGcag -5'
22399 5' -61 NC_005056.1 + 10706 0.67 0.25133
Target:  5'- aGGUcauUACCGGCGGCAcagGCCAGCaUCa -3'
miRNA:   3'- -UCGc--GUGGCCGCCGUag-UGGUCGcAG- -5'
22399 5' -61 NC_005056.1 + 5942 0.66 0.264697
Target:  5'- gGGCGCauucgguuguuaACUGGCuuucuuuuucgGGCGUCcacguuuuGCCGGUGUCa -3'
miRNA:   3'- -UCGCG------------UGGCCG-----------CCGUAG--------UGGUCGCAG- -5'
22399 5' -61 NC_005056.1 + 4655 0.66 0.278635
Target:  5'- cGCGCGCCGgggcuucauuGCGGUAuuUCugCAGCc-- -3'
miRNA:   3'- uCGCGUGGC----------CGCCGU--AGugGUCGcag -5'
22399 5' -61 NC_005056.1 + 1759 0.66 0.293152
Target:  5'- cAGCGCcggauGCUGGUacuGGCAcCGCCGGUGg- -3'
miRNA:   3'- -UCGCG-----UGGCCG---CCGUaGUGGUCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.