miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2240 5' -65.9 NC_001405.1 + 23899 1.07 0.000066
Target:  5'- gUGCCGCGCACACCCAGCCCGCGGCCAu -3'
miRNA:   3'- -ACGGCGCGUGUGGGUCGGGCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 16233 0.72 0.054885
Target:  5'- -aCCGCGCACgucGCaCCGGCCgacggGCGGCCAu -3'
miRNA:   3'- acGGCGCGUG---UG-GGUCGGg----CGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 12729 0.72 0.056458
Target:  5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3'
miRNA:   3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 8268 0.71 0.060926
Target:  5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3'
miRNA:   3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 12246 0.71 0.065
Target:  5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3'
miRNA:   3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5'
2240 5' -65.9 NC_001405.1 + 18601 0.71 0.068755
Target:  5'- aGCCGCGCgucccuGCGCCguGCCgccaGCGGuCCGc -3'
miRNA:   3'- aCGGCGCG------UGUGGguCGGg---CGCC-GGU- -5'
2240 5' -65.9 NC_001405.1 + 7870 0.7 0.072718
Target:  5'- cGCCGCGCGagACCUAGCC-GUGGaCCu -3'
miRNA:   3'- aCGGCGCGUg-UGGGUCGGgCGCC-GGu -5'
2240 5' -65.9 NC_001405.1 + 16042 0.7 0.076901
Target:  5'- gGCCGCGUuugugcGCGCCCcagGGCgCGCGGUa- -3'
miRNA:   3'- aCGGCGCG------UGUGGG---UCGgGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 23081 0.7 0.079078
Target:  5'- gUGCUGCGUGCaugACgCGGCCUGUccGGCCAa -3'
miRNA:   3'- -ACGGCGCGUG---UGgGUCGGGCG--CCGGU- -5'
2240 5' -65.9 NC_001405.1 + 16308 0.7 0.079078
Target:  5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3'
miRNA:   3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 18958 0.7 0.081313
Target:  5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3'
miRNA:   3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5'
2240 5' -65.9 NC_001405.1 + 12535 0.7 0.083609
Target:  5'- gGCCGaaaacaggGC-CAUCCGGCCCGaugaGGCCGg -3'
miRNA:   3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5'
2240 5' -65.9 NC_001405.1 + 11513 0.69 0.088388
Target:  5'- gUGUgCGCGCGCGggacuaauCCCGGUCCGCGcGUCGg -3'
miRNA:   3'- -ACG-GCGCGUGU--------GGGUCGGGCGC-CGGU- -5'
2240 5' -65.9 NC_001405.1 + 10856 0.69 0.090873
Target:  5'- cGCCGCGCGCGgCCAGU----GGCCAa -3'
miRNA:   3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 17267 0.69 0.096045
Target:  5'- aUGCCGCgGUGCAggCGGCCgcUGCGGCCGc -3'
miRNA:   3'- -ACGGCG-CGUGUggGUCGG--GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 16172 0.69 0.098734
Target:  5'- cGCCGggcucCGCGCACCaCGGUCUGaauGGCCGc -3'
miRNA:   3'- aCGGC-----GCGUGUGG-GUCGGGCg--CCGGU- -5'
2240 5' -65.9 NC_001405.1 + 17518 0.69 0.098734
Target:  5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3'
miRNA:   3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5'
2240 5' -65.9 NC_001405.1 + 17815 0.68 0.105191
Target:  5'- cGCCGCcggugguGCGCACgacgcaugccgcccgUCAGgCCGUGGCCGg -3'
miRNA:   3'- aCGGCG-------CGUGUG---------------GGUCgGGCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 16184 0.68 0.106939
Target:  5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3'
miRNA:   3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 17758 0.68 0.110216
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.