miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2240 5' -65.9 NC_001405.1 + 3794 0.66 0.169688
Target:  5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3'
miRNA:   3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5'
2240 5' -65.9 NC_001405.1 + 5398 0.66 0.15669
Target:  5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3'
miRNA:   3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 6389 0.66 0.152561
Target:  5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3'
miRNA:   3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 6446 0.66 0.165252
Target:  5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3'
miRNA:   3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5'
2240 5' -65.9 NC_001405.1 + 6625 0.66 0.15669
Target:  5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3'
miRNA:   3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5'
2240 5' -65.9 NC_001405.1 + 7870 0.7 0.072718
Target:  5'- cGCCGCGCGagACCUAGCC-GUGGaCCu -3'
miRNA:   3'- aCGGCGCGUg-UGGGUCGGgCGCC-GGu -5'
2240 5' -65.9 NC_001405.1 + 8268 0.71 0.060926
Target:  5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3'
miRNA:   3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 8563 0.67 0.129803
Target:  5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3'
miRNA:   3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 8715 0.67 0.129803
Target:  5'- -uCCGCGCGCAgcaccagcUCCuGCCCGCGcGCg- -3'
miRNA:   3'- acGGCGCGUGU--------GGGuCGGGCGC-CGgu -5'
2240 5' -65.9 NC_001405.1 + 10856 0.69 0.090873
Target:  5'- cGCCGCGCGCGgCCAGU----GGCCAa -3'
miRNA:   3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 11513 0.69 0.088388
Target:  5'- gUGUgCGCGCGCGggacuaauCCCGGUCCGCGcGUCGg -3'
miRNA:   3'- -ACG-GCGCGUGU--------GGGUCGGGCGC-CGGU- -5'
2240 5' -65.9 NC_001405.1 + 11544 0.66 0.174231
Target:  5'- cGUaCGCGguUACCaGGUCgGCGGCCGc -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGgCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 12019 0.66 0.152561
Target:  5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3'
miRNA:   3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5'
2240 5' -65.9 NC_001405.1 + 12081 0.68 0.110216
Target:  5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5'
2240 5' -65.9 NC_001405.1 + 12246 0.71 0.065
Target:  5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3'
miRNA:   3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5'
2240 5' -65.9 NC_001405.1 + 12535 0.7 0.083609
Target:  5'- gGCCGaaaacaggGC-CAUCCGGCCCGaugaGGCCGg -3'
miRNA:   3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5'
2240 5' -65.9 NC_001405.1 + 12729 0.72 0.056458
Target:  5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3'
miRNA:   3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 13204 0.68 0.116416
Target:  5'- cUGcCCGUGUccuccuGC-CCCAGCgCGCGGCUg -3'
miRNA:   3'- -AC-GGCGCG------UGuGGGUCGgGCGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 13897 0.66 0.148531
Target:  5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3'
miRNA:   3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5'
2240 5' -65.9 NC_001405.1 + 15975 0.66 0.169688
Target:  5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3'
miRNA:   3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.