miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22410 3' -54.1 NC_005056.1 + 12953 1.11 0.000437
Target:  5'- gGUCGCCAGGCUGGCAACAUCAUUCCCc -3'
miRNA:   3'- -CAGCGGUCCGACCGUUGUAGUAAGGG- -5'
22410 3' -54.1 NC_005056.1 + 8547 0.73 0.260886
Target:  5'- aUUGCCuccacGCUGGCGACGUCGUUgUCa -3'
miRNA:   3'- cAGCGGuc---CGACCGUUGUAGUAAgGG- -5'
22410 3' -54.1 NC_005056.1 + 9393 0.71 0.322413
Target:  5'- -cCGCCGGuaUgacccGGCGGCAUCcUUCCCg -3'
miRNA:   3'- caGCGGUCcgA-----CCGUUGUAGuAAGGG- -5'
22410 3' -54.1 NC_005056.1 + 11444 0.69 0.443931
Target:  5'- -cUGCCGuGGCUGGCGugGgCGUUUUCg -3'
miRNA:   3'- caGCGGU-CCGACCGUugUaGUAAGGG- -5'
22410 3' -54.1 NC_005056.1 + 15996 0.68 0.475442
Target:  5'- --gGCCGGuaaaaaaggcacGCUGGCGGCGUCGUUgCa -3'
miRNA:   3'- cagCGGUC------------CGACCGUUGUAGUAAgGg -5'
22410 3' -54.1 NC_005056.1 + 8038 0.68 0.475442
Target:  5'- -gCGCgCAGGCUGGCGuuuUCAUgcuUCgCCa -3'
miRNA:   3'- caGCG-GUCCGACCGUuguAGUA---AG-GG- -5'
22410 3' -54.1 NC_005056.1 + 8599 0.68 0.486192
Target:  5'- cGUCGCCAGcGUggaGGCAAUAc---UCCCg -3'
miRNA:   3'- -CAGCGGUC-CGa--CCGUUGUaguaAGGG- -5'
22410 3' -54.1 NC_005056.1 + 20721 0.66 0.598791
Target:  5'- --aGCCuGaGCgUGGCAuCGUCAgcUUCCCg -3'
miRNA:   3'- cagCGGuC-CG-ACCGUuGUAGU--AAGGG- -5'
22410 3' -54.1 NC_005056.1 + 20283 0.66 0.60922
Target:  5'- gGUCGCCGgaauauaaccaccGGUgccauacgUGGCGGCAUUAgUCCUu -3'
miRNA:   3'- -CAGCGGU-------------CCG--------ACCGUUGUAGUaAGGG- -5'
22410 3' -54.1 NC_005056.1 + 2984 0.66 0.60922
Target:  5'- cGUCGUCAGGCggcgcugcuguacUGGCAGgGgu-UUUCCg -3'
miRNA:   3'- -CAGCGGUCCG-------------ACCGUUgUaguAAGGG- -5'
22410 3' -54.1 NC_005056.1 + 2524 0.66 0.62199
Target:  5'- -cCGCCAGaUUGGCGcgACGUUuuauuuUUCCCg -3'
miRNA:   3'- caGCGGUCcGACCGU--UGUAGu-----AAGGG- -5'
22410 3' -54.1 NC_005056.1 + 4744 0.66 0.62199
Target:  5'- -gUGCUcgAGGCUGGCAuaAUCAccCCCc -3'
miRNA:   3'- caGCGG--UCCGACCGUugUAGUaaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.