Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22414 | 3' | -58.9 | NC_005056.1 | + | 1687 | 0.66 | 0.345524 |
Target: 5'- ---cCGGCCACCAcCGGCGgugccaguaccacGCAuCCGGc -3' miRNA: 3'- uaccGCCGGUGGU-GCCGU-------------UGUuGGCC- -5' |
|||||||
22414 | 3' | -58.9 | NC_005056.1 | + | 20418 | 0.66 | 0.354904 |
Target: 5'- cUGGCGGUCAagcuguguCCcCGGCGcaguACcACCGGu -3' miRNA: 3'- uACCGCCGGU--------GGuGCCGU----UGuUGGCC- -5' |
|||||||
22414 | 3' | -58.9 | NC_005056.1 | + | 5962 | 0.66 | 0.363586 |
Target: 5'- -cGGCGuGCCGCCcUGGCGcggggcGCAuUCGGu -3' miRNA: 3'- uaCCGC-CGGUGGuGCCGU------UGUuGGCC- -5' |
|||||||
22414 | 3' | -58.9 | NC_005056.1 | + | 5539 | 0.66 | 0.390503 |
Target: 5'- gGUGGCGcuuGCgGCCAUGcGCGcccACGcuGCCGGu -3' miRNA: 3'- -UACCGC---CGgUGGUGC-CGU---UGU--UGGCC- -5' |
|||||||
22414 | 3' | -58.9 | NC_005056.1 | + | 18778 | 0.66 | 0.390503 |
Target: 5'- cUGGCGcGCCugCuuGCGGaguGCGGCCa- -3' miRNA: 3'- uACCGC-CGGugG--UGCCgu-UGUUGGcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home