Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22417 | 5' | -52.9 | NC_005056.1 | + | 10325 | 0.72 | 0.364563 |
Target: 5'- aCGGGcGAaugacggucacguUAACCGGCCagcacaccgauACCgGCCAGCCa -3' miRNA: 3'- -GCCCaUU-------------AUUGGUUGG-----------UGG-CGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 26964 | 0.66 | 0.723411 |
Target: 5'- --cGUGAUGugCGugCgcGCCGCCAGgCa -3' miRNA: 3'- gccCAUUAUugGUugG--UGGCGGUCgG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 12933 | 0.66 | 0.689453 |
Target: 5'- uCGGGcggGAUAuucuggcuaaAUCGACCGuuGCC-GCCg -3' miRNA: 3'- -GCCCa--UUAU----------UGGUUGGUggCGGuCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 20363 | 0.67 | 0.643378 |
Target: 5'- cCGGG----GACaCAGCUugACCGCCAGUUa -3' miRNA: 3'- -GCCCauuaUUG-GUUGG--UGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 4286 | 0.67 | 0.631801 |
Target: 5'- -uGGUGuc-ACCGgcuCCAUCGCCAGCa -3' miRNA: 3'- gcCCAUuauUGGUu--GGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 12462 | 0.67 | 0.620224 |
Target: 5'- aCGGGaAAUAuACCGcacaggacgccACCACCGCgcgaaaaGGCCu -3' miRNA: 3'- -GCCCaUUAU-UGGU-----------UGGUGGCGg------UCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 9026 | 0.67 | 0.620224 |
Target: 5'- uCGGGUGAUGGCacagaaAGCC-CCGgaCGGCa -3' miRNA: 3'- -GCCCAUUAUUGg-----UUGGuGGCg-GUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 5495 | 0.68 | 0.608659 |
Target: 5'- cCGGGUAAacACCGccgcACC-CCGCCGuaCa -3' miRNA: 3'- -GCCCAUUauUGGU----UGGuGGCGGUcgG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 1742 | 0.68 | 0.608659 |
Target: 5'- aCGGGUcGUAACCAAUCcagACCGggcgggAGCCg -3' miRNA: 3'- -GCCCAuUAUUGGUUGG---UGGCgg----UCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 6619 | 0.68 | 0.585606 |
Target: 5'- uGGGUGcgGUGcuGCCAcacggcACCGCCGUCGaacuGCCc -3' miRNA: 3'- gCCCAU--UAU--UGGU------UGGUGGCGGU----CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16331 | 0.7 | 0.44296 |
Target: 5'- cCGaGGUGAaAGCCuACCGCCagaauuucaGCCAGCg -3' miRNA: 3'- -GC-CCAUUaUUGGuUGGUGG---------CGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 18434 | 0.71 | 0.432769 |
Target: 5'- aGGGgcugAAaAACCGuaucagugaaACCACCGCgCAGCUu -3' miRNA: 3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 10636 | 0.71 | 0.403037 |
Target: 5'- aCGGGcGGUGauGCUGGCCuguGCCGCCGGUa -3' miRNA: 3'- -GCCCaUUAU--UGGUUGG---UGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16402 | 0.72 | 0.374633 |
Target: 5'- uGGGauacGGUcGCCAguACCACCGCCAccgcguauGCCa -3' miRNA: 3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 5625 | 0.67 | 0.654944 |
Target: 5'- gCGGGUAu---CCAcagACuCACCGgCAGCg -3' miRNA: 3'- -GCCCAUuauuGGU---UG-GUGGCgGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 8301 | 0.67 | 0.654944 |
Target: 5'- cCGGGcgcugGugCAACCGgCGCaCAGCa -3' miRNA: 3'- -GCCCauua-UugGUUGGUgGCG-GUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 76 | 0.67 | 0.654944 |
Target: 5'- -------aAAUCAgcACCACCGCCAGCg -3' miRNA: 3'- gcccauuaUUGGU--UGGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 9606 | 0.67 | 0.665334 |
Target: 5'- uGGGUc--AGCCAcugaaGCCagucggugcacauGCCGCCGGUCu -3' miRNA: 3'- gCCCAuuaUUGGU-----UGG-------------UGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 12016 | 0.66 | 0.723411 |
Target: 5'- cCGGGaca-GGCaauuuACCACCGCCAuccccgacgGCCa -3' miRNA: 3'- -GCCCauuaUUGgu---UGGUGGCGGU---------CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 26105 | 1.13 | 0.000476 |
Target: 5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3' miRNA: 3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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