Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22417 | 5' | -52.9 | NC_005056.1 | + | 18446 | 0.67 | 0.631801 |
Target: 5'- gCGGGUAuUAauucccacagcaGCCAGuucCCGCUGCUGGCg -3' miRNA: 3'- -GCCCAUuAU------------UGGUU---GGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 9800 | 0.69 | 0.517772 |
Target: 5'- uCGGGUucAUAcUCAAUCACCGCCccGUCa -3' miRNA: 3'- -GCCCAu-UAUuGGUUGGUGGCGGu-CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 26105 | 1.13 | 0.000476 |
Target: 5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3' miRNA: 3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 3590 | 0.66 | 0.723411 |
Target: 5'- cCGGGUc---AUCggUgACgGCCAGCCc -3' miRNA: 3'- -GCCCAuuauUGGuuGgUGgCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 12016 | 0.66 | 0.723411 |
Target: 5'- cCGGGaca-GGCaauuuACCACCGCCAuccccgacgGCCa -3' miRNA: 3'- -GCCCauuaUUGgu---UGGUGGCGGU---------CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 9606 | 0.67 | 0.665334 |
Target: 5'- uGGGUc--AGCCAcugaaGCCagucggugcacauGCCGCCGGUCu -3' miRNA: 3'- gCCCAuuaUUGGU-----UGG-------------UGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 76 | 0.67 | 0.654944 |
Target: 5'- -------aAAUCAgcACCACCGCCAGCg -3' miRNA: 3'- gcccauuaUUGGU--UGGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 8301 | 0.67 | 0.654944 |
Target: 5'- cCGGGcgcugGugCAACCGgCGCaCAGCa -3' miRNA: 3'- -GCCCauua-UugGUUGGUgGCG-GUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 5625 | 0.67 | 0.654944 |
Target: 5'- gCGGGUAu---CCAcagACuCACCGgCAGCg -3' miRNA: 3'- -GCCCAUuauuGGU---UG-GUGGCgGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 7610 | 0.69 | 0.524431 |
Target: 5'- gCGGGUAAaucagggacaguGCCAGCauCAgCGCCAGCg -3' miRNA: 3'- -GCCCAUUau----------UGGUUG--GUgGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 17889 | 0.69 | 0.540091 |
Target: 5'- uCGGcGacaaaaAACCGACCACCuuaCCGGCCa -3' miRNA: 3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 8028 | 0.68 | 0.551373 |
Target: 5'- uGGcGUuuucAUGcuucGCCAgaaacagccccGCCACCGCCAGCg -3' miRNA: 3'- gCC-CAu---UAU----UGGU-----------UGGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 10580 | 0.67 | 0.620224 |
Target: 5'- aGGGUAcgGG-CGACCGCCuCCuGCUg -3' miRNA: 3'- gCCCAUuaUUgGUUGGUGGcGGuCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16795 | 0.69 | 0.536721 |
Target: 5'- uGcGGUGAUGGgCuuguCCACCGCCcacaugugcgccucAGCCa -3' miRNA: 3'- gC-CCAUUAUUgGuu--GGUGGCGG--------------UCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 6836 | 0.68 | 0.608659 |
Target: 5'- gGGGUGAUGGgUucACCACCGgCAagcaccuuGCCg -3' miRNA: 3'- gCCCAUUAUUgGu-UGGUGGCgGU--------CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 11977 | 0.68 | 0.555905 |
Target: 5'- uCGuGGUAAUGuugaccuuccGCCcucccggcgcgguuGCCGCUGCCAGCUu -3' miRNA: 3'- -GC-CCAUUAU----------UGGu-------------UGGUGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16074 | 0.69 | 0.528888 |
Target: 5'- -cGGcGAUAGCCugcaacgaCGCCGCCAGCg -3' miRNA: 3'- gcCCaUUAUUGGuug-----GUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 19738 | 0.71 | 0.429739 |
Target: 5'- -cGGUGAUAACCGGCCaggcuacgagGCCauggcaccgaugacGCCAGUCa -3' miRNA: 3'- gcCCAUUAUUGGUUGG----------UGG--------------CGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 21697 | 0.68 | 0.585606 |
Target: 5'- uCGGGUcuuuuGUGugUAACCACUuuGCCGuuacGCCg -3' miRNA: 3'- -GCCCAu----UAUugGUUGGUGG--CGGU----CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 1380 | 0.68 | 0.574139 |
Target: 5'- -------aGGCCAGCCGCagcgaggaaGCCAGCCa -3' miRNA: 3'- gcccauuaUUGGUUGGUGg--------CGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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