Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22417 | 5' | -52.9 | NC_005056.1 | + | 5495 | 0.68 | 0.608659 |
Target: 5'- cCGGGUAAacACCGccgcACC-CCGCCGuaCa -3' miRNA: 3'- -GCCCAUUauUGGU----UGGuGGCGGUcgG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 1742 | 0.68 | 0.608659 |
Target: 5'- aCGGGUcGUAACCAAUCcagACCGggcgggAGCCg -3' miRNA: 3'- -GCCCAuUAUUGGUUGG---UGGCgg----UCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 6619 | 0.68 | 0.585606 |
Target: 5'- uGGGUGcgGUGcuGCCAcacggcACCGCCGUCGaacuGCCc -3' miRNA: 3'- gCCCAU--UAU--UGGU------UGGUGGCGGU----CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 7610 | 0.69 | 0.524431 |
Target: 5'- gCGGGUAAaucagggacaguGCCAGCauCAgCGCCAGCg -3' miRNA: 3'- -GCCCAUUau----------UGGUUG--GUgGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 9800 | 0.69 | 0.517772 |
Target: 5'- uCGGGUucAUAcUCAAUCACCGCCccGUCa -3' miRNA: 3'- -GCCCAu-UAUuGGUUGGUGGCGGu-CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16074 | 0.69 | 0.528888 |
Target: 5'- -cGGcGAUAGCCugcaacgaCGCCGCCAGCg -3' miRNA: 3'- gcCCaUUAUUGGuug-----GUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 17889 | 0.69 | 0.540091 |
Target: 5'- uCGGcGacaaaaAACCGACCACCuuaCCGGCCa -3' miRNA: 3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16795 | 0.69 | 0.536721 |
Target: 5'- uGcGGUGAUGGgCuuguCCACCGCCcacaugugcgccucAGCCa -3' miRNA: 3'- gC-CCAUUAUUgGuu--GGUGGCGG--------------UCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16331 | 0.7 | 0.44296 |
Target: 5'- cCGaGGUGAaAGCCuACCGCCagaauuucaGCCAGCg -3' miRNA: 3'- -GC-CCAUUaUUGGuUGGUGG---------CGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 19738 | 0.71 | 0.429739 |
Target: 5'- -cGGUGAUAACCGGCCaggcuacgagGCCauggcaccgaugacGCCAGUCa -3' miRNA: 3'- gcCCAUUAUUGGUUGG----------UGG--------------CGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 18434 | 0.71 | 0.432769 |
Target: 5'- aGGGgcugAAaAACCGuaucagugaaACCACCGCgCAGCUu -3' miRNA: 3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16236 | 0.71 | 0.412804 |
Target: 5'- -cGGUu---ACCGACUcuGCCGCCAGCa -3' miRNA: 3'- gcCCAuuauUGGUUGG--UGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 4034 | 0.71 | 0.403037 |
Target: 5'- aGGGc-GUcACC-GCCACCGCCGGUg -3' miRNA: 3'- gCCCauUAuUGGuUGGUGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 10636 | 0.71 | 0.403037 |
Target: 5'- aCGGGcGGUGauGCUGGCCuguGCCGCCGGUa -3' miRNA: 3'- -GCCCaUUAU--UGGUUGG---UGGCGGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 8899 | 0.71 | 0.412804 |
Target: 5'- cCGGGcgGGUGACCGGCU-CCGgCGGCg -3' miRNA: 3'- -GCCCa-UUAUUGGUUGGuGGCgGUCGg -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 10325 | 0.72 | 0.364563 |
Target: 5'- aCGGGcGAaugacggucacguUAACCGGCCagcacaccgauACCgGCCAGCCa -3' miRNA: 3'- -GCCCaUU-------------AUUGGUUGG-----------UGG-CGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 16402 | 0.72 | 0.374633 |
Target: 5'- uGGGauacGGUcGCCAguACCACCGCCAccgcguauGCCa -3' miRNA: 3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 12816 | 0.81 | 0.089972 |
Target: 5'- uCGGGUcAUuGCCcagcGCCGCCGCCAGCUc -3' miRNA: 3'- -GCCCAuUAuUGGu---UGGUGGCGGUCGG- -5' |
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22417 | 5' | -52.9 | NC_005056.1 | + | 26105 | 1.13 | 0.000476 |
Target: 5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3' miRNA: 3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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