miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22417 5' -52.9 NC_005056.1 + 10636 0.71 0.403037
Target:  5'- aCGGGcGGUGauGCUGGCCuguGCCGCCGGUa -3'
miRNA:   3'- -GCCCaUUAU--UGGUUGG---UGGCGGUCGg -5'
22417 5' -52.9 NC_005056.1 + 11977 0.68 0.555905
Target:  5'- uCGuGGUAAUGuugaccuuccGCCcucccggcgcgguuGCCGCUGCCAGCUu -3'
miRNA:   3'- -GC-CCAUUAU----------UGGu-------------UGGUGGCGGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 12016 0.66 0.723411
Target:  5'- cCGGGaca-GGCaauuuACCACCGCCAuccccgacgGCCa -3'
miRNA:   3'- -GCCCauuaUUGgu---UGGUGGCGGU---------CGG- -5'
22417 5' -52.9 NC_005056.1 + 12462 0.67 0.620224
Target:  5'- aCGGGaAAUAuACCGcacaggacgccACCACCGCgcgaaaaGGCCu -3'
miRNA:   3'- -GCCCaUUAU-UGGU-----------UGGUGGCGg------UCGG- -5'
22417 5' -52.9 NC_005056.1 + 12816 0.81 0.089972
Target:  5'- uCGGGUcAUuGCCcagcGCCGCCGCCAGCUc -3'
miRNA:   3'- -GCCCAuUAuUGGu---UGGUGGCGGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 12933 0.66 0.689453
Target:  5'- uCGGGcggGAUAuucuggcuaaAUCGACCGuuGCC-GCCg -3'
miRNA:   3'- -GCCCa--UUAU----------UGGUUGGUggCGGuCGG- -5'
22417 5' -52.9 NC_005056.1 + 16074 0.69 0.528888
Target:  5'- -cGGcGAUAGCCugcaacgaCGCCGCCAGCg -3'
miRNA:   3'- gcCCaUUAUUGGuug-----GUGGCGGUCGg -5'
22417 5' -52.9 NC_005056.1 + 16236 0.71 0.412804
Target:  5'- -cGGUu---ACCGACUcuGCCGCCAGCa -3'
miRNA:   3'- gcCCAuuauUGGUUGG--UGGCGGUCGg -5'
22417 5' -52.9 NC_005056.1 + 16331 0.7 0.44296
Target:  5'- cCGaGGUGAaAGCCuACCGCCagaauuucaGCCAGCg -3'
miRNA:   3'- -GC-CCAUUaUUGGuUGGUGG---------CGGUCGg -5'
22417 5' -52.9 NC_005056.1 + 16402 0.72 0.374633
Target:  5'- uGGGauacGGUcGCCAguACCACCGCCAccgcguauGCCa -3'
miRNA:   3'- gCCCa---UUAuUGGU--UGGUGGCGGU--------CGG- -5'
22417 5' -52.9 NC_005056.1 + 16795 0.69 0.536721
Target:  5'- uGcGGUGAUGGgCuuguCCACCGCCcacaugugcgccucAGCCa -3'
miRNA:   3'- gC-CCAUUAUUgGuu--GGUGGCGG--------------UCGG- -5'
22417 5' -52.9 NC_005056.1 + 17889 0.69 0.540091
Target:  5'- uCGGcGacaaaaAACCGACCACCuuaCCGGCCa -3'
miRNA:   3'- -GCC-Cauua--UUGGUUGGUGGc--GGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 18434 0.71 0.432769
Target:  5'- aGGGgcugAAaAACCGuaucagugaaACCACCGCgCAGCUu -3'
miRNA:   3'- gCCCa---UUaUUGGU----------UGGUGGCG-GUCGG- -5'
22417 5' -52.9 NC_005056.1 + 18446 0.67 0.631801
Target:  5'- gCGGGUAuUAauucccacagcaGCCAGuucCCGCUGCUGGCg -3'
miRNA:   3'- -GCCCAUuAU------------UGGUU---GGUGGCGGUCGg -5'
22417 5' -52.9 NC_005056.1 + 19738 0.71 0.429739
Target:  5'- -cGGUGAUAACCGGCCaggcuacgagGCCauggcaccgaugacGCCAGUCa -3'
miRNA:   3'- gcCCAUUAUUGGUUGG----------UGG--------------CGGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 20363 0.67 0.643378
Target:  5'- cCGGG----GACaCAGCUugACCGCCAGUUa -3'
miRNA:   3'- -GCCCauuaUUG-GUUGG--UGGCGGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 21697 0.68 0.585606
Target:  5'- uCGGGUcuuuuGUGugUAACCACUuuGCCGuuacGCCg -3'
miRNA:   3'- -GCCCAu----UAUugGUUGGUGG--CGGU----CGG- -5'
22417 5' -52.9 NC_005056.1 + 26105 1.13 0.000476
Target:  5'- uCGGGUAAUAACCAACCACCGCCAGCCa -3'
miRNA:   3'- -GCCCAUUAUUGGUUGGUGGCGGUCGG- -5'
22417 5' -52.9 NC_005056.1 + 26964 0.66 0.723411
Target:  5'- --cGUGAUGugCGugCgcGCCGCCAGgCa -3'
miRNA:   3'- gccCAUUAUugGUugG--UGGCGGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.