Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 16288 | 0.69 | 0.920127 |
Target: 5'- cGCGCUuucgGGUAUAuCAGCGCAuggggcuGUaaaACCa -3' miRNA: 3'- -CGCGA----CUAUAU-GUCGCGUuu-----UAg--UGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 16343 | 0.73 | 0.761554 |
Target: 5'- uGCGCUGAUAUACccgaaagcGCGCAGcuUCugacagacugauGCCa -3' miRNA: 3'- -CGCGACUAUAUGu-------CGCGUUuuAG------------UGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 16449 | 0.74 | 0.714803 |
Target: 5'- uGCGCUGGgucUGC-GCGCuAAAAUCgACCa -3' miRNA: 3'- -CGCGACUau-AUGuCGCG-UUUUAG-UGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 17737 | 0.76 | 0.592937 |
Target: 5'- uGCGCUGAUuaagGUGCugccGCGCAugacggCACCa -3' miRNA: 3'- -CGCGACUA----UAUGu---CGCGUuuua--GUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 18586 | 0.67 | 0.970629 |
Target: 5'- gGCGCUGccgGUGUggggauugcgGCGGCGgGAacGAUgGCCg -3' miRNA: 3'- -CGCGAC---UAUA----------UGUCGCgUU--UUAgUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 18806 | 0.68 | 0.95437 |
Target: 5'- cCGCcGAg--GCGGCaGUAuuGUCACCg -3' miRNA: 3'- cGCGaCUauaUGUCG-CGUuuUAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 19388 | 0.69 | 0.920127 |
Target: 5'- uCGCUGAUuu-CAGgGCuuccUCACCa -3' miRNA: 3'- cGCGACUAuauGUCgCGuuuuAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 20515 | 0.69 | 0.929839 |
Target: 5'- aCGCUGccacaccagaccAUGCAGCGCGAAucagauuAUCGCUg -3' miRNA: 3'- cGCGACua----------UAUGUCGCGUUU-------UAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 20859 | 0.69 | 0.905236 |
Target: 5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3' miRNA: 3'- -CGCGA-------------CUAUaUGUCgCGUUUUAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 20962 | 0.68 | 0.944312 |
Target: 5'- cGCGCUGAcauuugAUGCAG-GCAGuacgcugaCGCCg -3' miRNA: 3'- -CGCGACUa-----UAUGUCgCGUUuua-----GUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 21005 | 0.68 | 0.938779 |
Target: 5'- aUGCUGAUGcucgACAGCaGgGAuAUUACCg -3' miRNA: 3'- cGCGACUAUa---UGUCG-CgUUuUAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 25807 | 0.68 | 0.95437 |
Target: 5'- uGCGCUGGUuUGCgaagAGUGUGAcg-CGCCa -3' miRNA: 3'- -CGCGACUAuAUG----UCGCGUUuuaGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 26463 | 0.72 | 0.794944 |
Target: 5'- uGCGCcgGAUGUagucAUAGCGUGAAGUaACCa -3' miRNA: 3'- -CGCGa-CUAUA----UGUCGCGUUUUAgUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 26501 | 0.66 | 0.986556 |
Target: 5'- aGCGCgUGAau--CAGCGCcauGAAAUgaaCACCg -3' miRNA: 3'- -CGCG-ACUauauGUCGCG---UUUUA---GUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 26550 | 0.66 | 0.984515 |
Target: 5'- gGCGCUGAUu--CAcGCGCucAAUgCGCg -3' miRNA: 3'- -CGCGACUAuauGU-CGCGuuUUA-GUGg -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 26695 | 0.72 | 0.805671 |
Target: 5'- uCGCUGuu-UACggaugaGGCGCAGAcUCACCu -3' miRNA: 3'- cGCGACuauAUG------UCGCGUUUuAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 26885 | 0.66 | 0.986556 |
Target: 5'- uGCGCUGGcAUGaGGCGUuacuGAUUGCUg -3' miRNA: 3'- -CGCGACUaUAUgUCGCGuu--UUAGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 27118 | 0.67 | 0.973941 |
Target: 5'- uCGCcGGUAUugAGCGUuacgcCGCCg -3' miRNA: 3'- cGCGaCUAUAugUCGCGuuuuaGUGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 27812 | 0.69 | 0.926687 |
Target: 5'- uGCGCUGuAUAU-CAGCGCGcagggcggggcAAAUguCCc -3' miRNA: 3'- -CGCGAC-UAUAuGUCGCGU-----------UUUAguGG- -5' |
|||||||
22420 | 5' | -45.6 | NC_005056.1 | + | 27861 | 1.18 | 0.001439 |
Target: 5'- cGCGCUGAUAUACAGCGCAAAAUCACCa -3' miRNA: 3'- -CGCGACUAUAUGUCGCGUUUUAGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home