miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22420 5' -45.6 NC_005056.1 + 1254 0.72 0.794944
Target:  5'- uGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUCGCguUUUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 3392 0.72 0.784005
Target:  5'- gGCGCUGAaagGCaaaugGGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUG-----UCGCG--------UUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 3447 0.66 0.979737
Target:  5'- aGCGCccauuUGccuuuCAGCGCcGAAUCAUCg -3'
miRNA:   3'- -CGCG-----ACuauauGUCGCGuUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5314 0.72 0.803543
Target:  5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3'
miRNA:   3'- -CGCGACUAuAUGUCGCguuuuagUGG- -5'
22420 5' -45.6 NC_005056.1 + 5365 0.69 0.932904
Target:  5'- cGUGCUGGa--GCAGgGCAAAGgugCACa -3'
miRNA:   3'- -CGCGACUauaUGUCgCGUUUUa--GUGg -5'
22420 5' -45.6 NC_005056.1 + 5634 0.7 0.890484
Target:  5'- uGC-CUGAUGaAguGCGCGcaaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUAUaUguCGCGU------------UUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5688 0.67 0.973941
Target:  5'- aCGCUGGUgAUGCcgccgguGCGCuGGcUCACCu -3'
miRNA:   3'- cGCGACUA-UAUGu------CGCGuUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 6007 0.7 0.882244
Target:  5'- gGCGgUGGacgccgGUACAGCGuCAGGugauUCACCc -3'
miRNA:   3'- -CGCgACUa-----UAUGUCGC-GUUUu---AGUGG- -5'
22420 5' -45.6 NC_005056.1 + 6611 0.67 0.975187
Target:  5'- -gGCUGAacuggGUGCGGUGCugccacacggCACCg -3'
miRNA:   3'- cgCGACUa----UAUGUCGCGuuuua-----GUGG- -5'
22420 5' -45.6 NC_005056.1 + 6856 0.7 0.873685
Target:  5'- uGCGCccGAUAaACAGaCGCGGGGugauggguUCACCa -3'
miRNA:   3'- -CGCGa-CUAUaUGUC-GCGUUUU--------AGUGG- -5'
22420 5' -45.6 NC_005056.1 + 7835 0.7 0.882244
Target:  5'- cGCGCUGAUuUACcuCGUGGcGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGucGCGUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 8008 0.67 0.967026
Target:  5'- uCGCUGG---ACAGgGUGAAcaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUCgCGUUU----UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 8153 0.68 0.938779
Target:  5'- aGCG-UGAagcACAGCGCGAGAaaACCa -3'
miRNA:   3'- -CGCgACUauaUGUCGCGUUUUagUGG- -5'
22420 5' -45.6 NC_005056.1 + 8298 0.73 0.761554
Target:  5'- gGCGCUGGUGcaacCGGCGCAcag-CAUCa -3'
miRNA:   3'- -CGCGACUAUau--GUCGCGUuuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 9183 0.71 0.826434
Target:  5'- aUGgaGuuuUACGGCGgAAAGUCACCg -3'
miRNA:   3'- cGCgaCuauAUGUCGCgUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 10001 0.68 0.95437
Target:  5'- uGCGC-GAUGuUGCcGCGCAucGUC-CCg -3'
miRNA:   3'- -CGCGaCUAU-AUGuCGCGUuuUAGuGG- -5'
22420 5' -45.6 NC_005056.1 + 10227 0.72 0.805671
Target:  5'- gGCGCuUGAguUGCAGauUAAAGUCGCCu -3'
miRNA:   3'- -CGCG-ACUauAUGUCgcGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 12076 0.78 0.486105
Target:  5'- -gGCUGAUuuuguuCAGCGCAu-GUCGCCa -3'
miRNA:   3'- cgCGACUAuau---GUCGCGUuuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 14180 0.66 0.979737
Target:  5'- -gGCaGAUGaACAGCaacaacagGCAGAAUCACa -3'
miRNA:   3'- cgCGaCUAUaUGUCG--------CGUUUUAGUGg -5'
22420 5' -45.6 NC_005056.1 + 14968 0.66 0.976973
Target:  5'- uGCGCU---AUGCAG-GCAAAucCACCu -3'
miRNA:   3'- -CGCGAcuaUAUGUCgCGUUUuaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.