miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22420 5' -45.6 NC_005056.1 + 27861 1.18 0.001439
Target:  5'- cGCGCUGAUAUACAGCGCAAAAUCACCa -3'
miRNA:   3'- -CGCGACUAUAUGUCGCGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 12076 0.78 0.486105
Target:  5'- -gGCUGAUuuuguuCAGCGCAu-GUCGCCa -3'
miRNA:   3'- cgCGACUAuau---GUCGCGUuuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 17737 0.76 0.592937
Target:  5'- uGCGCUGAUuaagGUGCugccGCGCAugacggCACCa -3'
miRNA:   3'- -CGCGACUA----UAUGu---CGCGUuuua--GUGG- -5'
22420 5' -45.6 NC_005056.1 + 27990 0.74 0.690756
Target:  5'- cGCGCcGAgAUGCGGCGCGuAAAUgccUACCa -3'
miRNA:   3'- -CGCGaCUaUAUGUCGCGU-UUUA---GUGG- -5'
22420 5' -45.6 NC_005056.1 + 16449 0.74 0.714803
Target:  5'- uGCGCUGGgucUGC-GCGCuAAAAUCgACCa -3'
miRNA:   3'- -CGCGACUau-AUGuCGCG-UUUUAG-UGG- -5'
22420 5' -45.6 NC_005056.1 + 16343 0.73 0.761554
Target:  5'- uGCGCUGAUAUACccgaaagcGCGCAGcuUCugacagacugauGCCa -3'
miRNA:   3'- -CGCGACUAUAUGu-------CGCGUUuuAG------------UGG- -5'
22420 5' -45.6 NC_005056.1 + 8298 0.73 0.761554
Target:  5'- gGCGCUGGUGcaacCGGCGCAcag-CAUCa -3'
miRNA:   3'- -CGCGACUAUau--GUCGCGUuuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 3392 0.72 0.784005
Target:  5'- gGCGCUGAaagGCaaaugGGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUG-----UCGCG--------UUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 1254 0.72 0.794944
Target:  5'- uGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUCGCguUUUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 26463 0.72 0.794944
Target:  5'- uGCGCcgGAUGUagucAUAGCGUGAAGUaACCa -3'
miRNA:   3'- -CGCGa-CUAUA----UGUCGCGUUUUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 5314 0.72 0.803543
Target:  5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3'
miRNA:   3'- -CGCGACUAuAUGUCGCguuuuagUGG- -5'
22420 5' -45.6 NC_005056.1 + 26695 0.72 0.805671
Target:  5'- uCGCUGuu-UACggaugaGGCGCAGAcUCACCu -3'
miRNA:   3'- cGCGACuauAUG------UCGCGUUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 10227 0.72 0.805671
Target:  5'- gGCGCuUGAguUGCAGauUAAAGUCGCCu -3'
miRNA:   3'- -CGCG-ACUauAUGUCgcGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 9183 0.71 0.826434
Target:  5'- aUGgaGuuuUACGGCGgAAAGUCACCg -3'
miRNA:   3'- cGCgaCuauAUGUCGCgUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 6856 0.7 0.873685
Target:  5'- uGCGCccGAUAaACAGaCGCGGGGugauggguUCACCa -3'
miRNA:   3'- -CGCGa-CUAUaUGUC-GCGUUUU--------AGUGG- -5'
22420 5' -45.6 NC_005056.1 + 6007 0.7 0.882244
Target:  5'- gGCGgUGGacgccgGUACAGCGuCAGGugauUCACCc -3'
miRNA:   3'- -CGCgACUa-----UAUGUCGC-GUUUu---AGUGG- -5'
22420 5' -45.6 NC_005056.1 + 7835 0.7 0.882244
Target:  5'- cGCGCUGAUuUACcuCGUGGcGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGucGCGUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5634 0.7 0.890484
Target:  5'- uGC-CUGAUGaAguGCGCGcaaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUAUaUguCGCGU------------UUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 20859 0.69 0.905236
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUCgCGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 19388 0.69 0.920127
Target:  5'- uCGCUGAUuu-CAGgGCuuccUCACCa -3'
miRNA:   3'- cGCGACUAuauGUCgCGuuuuAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.