miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22420 5' -45.6 NC_005056.1 + 5688 0.67 0.973941
Target:  5'- aCGCUGGUgAUGCcgccgguGCGCuGGcUCACCu -3'
miRNA:   3'- cGCGACUA-UAUGu------CGCGuUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 20515 0.69 0.929839
Target:  5'- aCGCUGccacaccagaccAUGCAGCGCGAAucagauuAUCGCUg -3'
miRNA:   3'- cGCGACua----------UAUGUCGCGUUU-------UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5365 0.69 0.932904
Target:  5'- cGUGCUGGa--GCAGgGCAAAGgugCACa -3'
miRNA:   3'- -CGCGACUauaUGUCgCGUUUUa--GUGg -5'
22420 5' -45.6 NC_005056.1 + 21005 0.68 0.938779
Target:  5'- aUGCUGAUGcucgACAGCaGgGAuAUUACCg -3'
miRNA:   3'- cGCGACUAUa---UGUCG-CgUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 8153 0.68 0.938779
Target:  5'- aGCG-UGAagcACAGCGCGAGAaaACCa -3'
miRNA:   3'- -CGCgACUauaUGUCGCGUUUUagUGG- -5'
22420 5' -45.6 NC_005056.1 + 20962 0.68 0.944312
Target:  5'- cGCGCUGAcauuugAUGCAG-GCAGuacgcugaCGCCg -3'
miRNA:   3'- -CGCGACUa-----UAUGUCgCGUUuua-----GUGG- -5'
22420 5' -45.6 NC_005056.1 + 25807 0.68 0.95437
Target:  5'- uGCGCUGGUuUGCgaagAGUGUGAcg-CGCCa -3'
miRNA:   3'- -CGCGACUAuAUG----UCGCGUUuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 8008 0.67 0.967026
Target:  5'- uCGCUGG---ACAGgGUGAAcaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUCgCGUUU----UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 18586 0.67 0.970629
Target:  5'- gGCGCUGccgGUGUggggauugcgGCGGCGgGAacGAUgGCCg -3'
miRNA:   3'- -CGCGAC---UAUA----------UGUCGCgUU--UUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 27812 0.69 0.926687
Target:  5'- uGCGCUGuAUAU-CAGCGCGcagggcggggcAAAUguCCc -3'
miRNA:   3'- -CGCGAC-UAUAuGUCGCGU-----------UUUAguGG- -5'
22420 5' -45.6 NC_005056.1 + 16288 0.69 0.920127
Target:  5'- cGCGCUuucgGGUAUAuCAGCGCAuggggcuGUaaaACCa -3'
miRNA:   3'- -CGCGA----CUAUAU-GUCGCGUuu-----UAg--UGG- -5'
22420 5' -45.6 NC_005056.1 + 20859 0.69 0.905236
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUCgCGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 16449 0.74 0.714803
Target:  5'- uGCGCUGGgucUGC-GCGCuAAAAUCgACCa -3'
miRNA:   3'- -CGCGACUau-AUGuCGCG-UUUUAG-UGG- -5'
22420 5' -45.6 NC_005056.1 + 3392 0.72 0.784005
Target:  5'- gGCGCUGAaagGCaaaugGGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUG-----UCGCG--------UUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 1254 0.72 0.794944
Target:  5'- uGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUCGCguUUUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 10227 0.72 0.805671
Target:  5'- gGCGCuUGAguUGCAGauUAAAGUCGCCu -3'
miRNA:   3'- -CGCG-ACUauAUGUCgcGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 26695 0.72 0.805671
Target:  5'- uCGCUGuu-UACggaugaGGCGCAGAcUCACCu -3'
miRNA:   3'- cGCGACuauAUG------UCGCGUUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 9183 0.71 0.826434
Target:  5'- aUGgaGuuuUACGGCGgAAAGUCACCg -3'
miRNA:   3'- cGCgaCuauAUGUCGCgUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 7835 0.7 0.882244
Target:  5'- cGCGCUGAUuUACcuCGUGGcGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGucGCGUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 5634 0.7 0.890484
Target:  5'- uGC-CUGAUGaAguGCGCGcaaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUAUaUguCGCGU------------UUUAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.