miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22420 5' -45.6 NC_005056.1 + 27990 0.74 0.690756
Target:  5'- cGCGCcGAgAUGCGGCGCGuAAAUgccUACCa -3'
miRNA:   3'- -CGCGaCUaUAUGUCGCGU-UUUA---GUGG- -5'
22420 5' -45.6 NC_005056.1 + 27861 1.18 0.001439
Target:  5'- cGCGCUGAUAUACAGCGCAAAAUCACCa -3'
miRNA:   3'- -CGCGACUAUAUGUCGCGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 27812 0.69 0.926687
Target:  5'- uGCGCUGuAUAU-CAGCGCGcagggcggggcAAAUguCCc -3'
miRNA:   3'- -CGCGAC-UAUAuGUCGCGU-----------UUUAguGG- -5'
22420 5' -45.6 NC_005056.1 + 27118 0.67 0.973941
Target:  5'- uCGCcGGUAUugAGCGUuacgcCGCCg -3'
miRNA:   3'- cGCGaCUAUAugUCGCGuuuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 26885 0.66 0.986556
Target:  5'- uGCGCUGGcAUGaGGCGUuacuGAUUGCUg -3'
miRNA:   3'- -CGCGACUaUAUgUCGCGuu--UUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 26695 0.72 0.805671
Target:  5'- uCGCUGuu-UACggaugaGGCGCAGAcUCACCu -3'
miRNA:   3'- cGCGACuauAUG------UCGCGUUUuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 26550 0.66 0.984515
Target:  5'- gGCGCUGAUu--CAcGCGCucAAUgCGCg -3'
miRNA:   3'- -CGCGACUAuauGU-CGCGuuUUA-GUGg -5'
22420 5' -45.6 NC_005056.1 + 26501 0.66 0.986556
Target:  5'- aGCGCgUGAau--CAGCGCcauGAAAUgaaCACCg -3'
miRNA:   3'- -CGCG-ACUauauGUCGCG---UUUUA---GUGG- -5'
22420 5' -45.6 NC_005056.1 + 26463 0.72 0.794944
Target:  5'- uGCGCcgGAUGUagucAUAGCGUGAAGUaACCa -3'
miRNA:   3'- -CGCGa-CUAUA----UGUCGCGUUUUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 25807 0.68 0.95437
Target:  5'- uGCGCUGGUuUGCgaagAGUGUGAcg-CGCCa -3'
miRNA:   3'- -CGCGACUAuAUG----UCGCGUUuuaGUGG- -5'
22420 5' -45.6 NC_005056.1 + 21005 0.68 0.938779
Target:  5'- aUGCUGAUGcucgACAGCaGgGAuAUUACCg -3'
miRNA:   3'- cGCGACUAUa---UGUCG-CgUUuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 20962 0.68 0.944312
Target:  5'- cGCGCUGAcauuugAUGCAG-GCAGuacgcugaCGCCg -3'
miRNA:   3'- -CGCGACUa-----UAUGUCgCGUUuua-----GUGG- -5'
22420 5' -45.6 NC_005056.1 + 20859 0.69 0.905236
Target:  5'- cGCGCUuuauggcgauaucGGUAaACAG-GCGGAAUCGCUc -3'
miRNA:   3'- -CGCGA-------------CUAUaUGUCgCGUUUUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 20515 0.69 0.929839
Target:  5'- aCGCUGccacaccagaccAUGCAGCGCGAAucagauuAUCGCUg -3'
miRNA:   3'- cGCGACua----------UAUGUCGCGUUU-------UAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 19388 0.69 0.920127
Target:  5'- uCGCUGAUuu-CAGgGCuuccUCACCa -3'
miRNA:   3'- cGCGACUAuauGUCgCGuuuuAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 18806 0.68 0.95437
Target:  5'- cCGCcGAg--GCGGCaGUAuuGUCACCg -3'
miRNA:   3'- cGCGaCUauaUGUCG-CGUuuUAGUGG- -5'
22420 5' -45.6 NC_005056.1 + 18586 0.67 0.970629
Target:  5'- gGCGCUGccgGUGUggggauugcgGCGGCGgGAacGAUgGCCg -3'
miRNA:   3'- -CGCGAC---UAUA----------UGUCGCgUU--UUAgUGG- -5'
22420 5' -45.6 NC_005056.1 + 17737 0.76 0.592937
Target:  5'- uGCGCUGAUuaagGUGCugccGCGCAugacggCACCa -3'
miRNA:   3'- -CGCGACUA----UAUGu---CGCGUuuua--GUGG- -5'
22420 5' -45.6 NC_005056.1 + 16449 0.74 0.714803
Target:  5'- uGCGCUGGgucUGC-GCGCuAAAAUCgACCa -3'
miRNA:   3'- -CGCGACUau-AUGuCGCG-UUUUAG-UGG- -5'
22420 5' -45.6 NC_005056.1 + 16343 0.73 0.761554
Target:  5'- uGCGCUGAUAUACccgaaagcGCGCAGcuUCugacagacugauGCCa -3'
miRNA:   3'- -CGCGACUAUAUGu-------CGCGUUuuAG------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.