miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22440 3' -56.8 NC_005056.1 + 18662 0.66 0.482305
Target:  5'- aCCGGCcaucGUuccCGCCGCCGCAAUc -3'
miRNA:   3'- -GGCCGaccuCGuu-GUGGCGGCGUUAu -5'
22440 3' -56.8 NC_005056.1 + 6608 0.66 0.475984
Target:  5'- aCUGGCUGaacuGGGUgcggugcugccacacGGCACCGCCGuCGAa- -3'
miRNA:   3'- -GGCCGAC----CUCG---------------UUGUGGCGGC-GUUau -5'
22440 3' -56.8 NC_005056.1 + 10698 0.66 0.4614
Target:  5'- aCCGGCggcacaGGccAGCAuCACCGCCcguGCAGc- -3'
miRNA:   3'- -GGCCGa-----CC--UCGUuGUGGCGG---CGUUau -5'
22440 3' -56.8 NC_005056.1 + 701 0.67 0.42109
Target:  5'- cCUGGCUGaauGAGuCGGCcacgcuguuCCGCCGCAAg- -3'
miRNA:   3'- -GGCCGAC---CUC-GUUGu--------GGCGGCGUUau -5'
22440 3' -56.8 NC_005056.1 + 27778 0.67 0.411348
Target:  5'- -aGGCU---GCAcGCGCCGCCGCAGa- -3'
miRNA:   3'- ggCCGAccuCGU-UGUGGCGGCGUUau -5'
22440 3' -56.8 NC_005056.1 + 5481 0.67 0.401747
Target:  5'- aCGGuCUGaccaugccGGGUaAACACCGCCGCAc-- -3'
miRNA:   3'- gGCC-GAC--------CUCG-UUGUGGCGGCGUuau -5'
22440 3' -56.8 NC_005056.1 + 28105 0.67 0.381134
Target:  5'- aCCGGCUcccacgccuucuGAGC-ACGCCGCaGCAGUGc -3'
miRNA:   3'- -GGCCGAc-----------CUCGuUGUGGCGgCGUUAU- -5'
22440 3' -56.8 NC_005056.1 + 5607 0.69 0.313934
Target:  5'- aCCGGCagcgUGG-GCGcGCAUgGCCGCAAg- -3'
miRNA:   3'- -GGCCG----ACCuCGU-UGUGgCGGCGUUau -5'
22440 3' -56.8 NC_005056.1 + 6966 0.69 0.283111
Target:  5'- aCCGGCgauacccagcaUGGAGCcgaugccgcACACCGCagGCAGUGa -3'
miRNA:   3'- -GGCCG-----------ACCUCGu--------UGUGGCGg-CGUUAU- -5'
22440 3' -56.8 NC_005056.1 + 2819 0.7 0.248013
Target:  5'- aCGGCUgaugGGGGCAACgcugucccaGCCGUCGCGc-- -3'
miRNA:   3'- gGCCGA----CCUCGUUG---------UGGCGGCGUuau -5'
22440 3' -56.8 NC_005056.1 + 11150 0.7 0.241441
Target:  5'- aCCGGCUGGGGCGcgACAuCCGuCUGUc--- -3'
miRNA:   3'- -GGCCGACCUCGU--UGU-GGC-GGCGuuau -5'
22440 3' -56.8 NC_005056.1 + 27120 0.76 0.097383
Target:  5'- gCCGGUauuGAGCGuuACGCCGCCGCAGa- -3'
miRNA:   3'- -GGCCGac-CUCGU--UGUGGCGGCGUUau -5'
22440 3' -56.8 NC_005056.1 + 17503 1.09 0.000331
Target:  5'- aCCGGCUGGAGCAACACCGCCGCAAUAu -3'
miRNA:   3'- -GGCCGACCUCGUUGUGGCGGCGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.