miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22442 3' -56.2 NC_005056.1 + 1249 0.68 0.368151
Target:  5'- -aGCGguGUgcugauACCGGCGGUgaGUGGCu -3'
miRNA:   3'- ggCGCguCGaau---UGGCCGUCG--CACUG- -5'
22442 3' -56.2 NC_005056.1 + 2910 0.66 0.507474
Target:  5'- cCCGaCGguGCagAGCUGGaaaCAGCGcGACg -3'
miRNA:   3'- -GGC-GCguCGaaUUGGCC---GUCGCaCUG- -5'
22442 3' -56.2 NC_005056.1 + 3965 0.76 0.121031
Target:  5'- gCGcCGCAGCaaagccACCGGCgguGGCGUGACg -3'
miRNA:   3'- gGC-GCGUCGaau---UGGCCG---UCGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 5188 0.67 0.414901
Target:  5'- cUCG-GCAGCgaUGACCGcGCAGCGgGAa -3'
miRNA:   3'- -GGCgCGUCGa-AUUGGC-CGUCGCaCUg -5'
22442 3' -56.2 NC_005056.1 + 5636 0.7 0.293514
Target:  5'- uCCGUcaGCAgGCgggUAuccacagacucACCGGCAGCGUGGg -3'
miRNA:   3'- -GGCG--CGU-CGa--AU-----------UGGCCGUCGCACUg -5'
22442 3' -56.2 NC_005056.1 + 5647 0.67 0.424679
Target:  5'- gCGCGCaaAGCUgcacaaaaucACCGGUcuguuucuGCGUGACg -3'
miRNA:   3'- gGCGCG--UCGAau--------UGGCCGu-------CGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 5826 0.72 0.201675
Target:  5'- cCCGCGCccuGCgUAAgacCCGG-AGCGUGACa -3'
miRNA:   3'- -GGCGCGu--CGaAUU---GGCCgUCGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 5910 0.66 0.495655
Target:  5'- cCCGCGCcagGGCggcacGCCGGuCAGUGagggugaaucaccUGACg -3'
miRNA:   3'- -GGCGCG---UCGaau--UGGCC-GUCGC-------------ACUG- -5'
22442 3' -56.2 NC_005056.1 + 6343 0.67 0.424679
Target:  5'- aCCGCGUcGCUUuaugagcguuACC-GCGGCGUGGa -3'
miRNA:   3'- -GGCGCGuCGAAu---------UGGcCGUCGCACUg -5'
22442 3' -56.2 NC_005056.1 + 7630 0.67 0.434594
Target:  5'- uCUGUGUGGUU--GCCGGUGGUGUcGGCg -3'
miRNA:   3'- -GGCGCGUCGAauUGGCCGUCGCA-CUG- -5'
22442 3' -56.2 NC_005056.1 + 8900 0.66 0.475541
Target:  5'- aCCGgGCGGg-UGACCGGCuccGGCGgcgGGg -3'
miRNA:   3'- -GGCgCGUCgaAUUGGCCG---UCGCa--CUg -5'
22442 3' -56.2 NC_005056.1 + 9445 0.7 0.309021
Target:  5'- gCCGC-CGGgUcauACCGGCGGCaauGUGACg -3'
miRNA:   3'- -GGCGcGUCgAau-UGGCCGUCG---CACUG- -5'
22442 3' -56.2 NC_005056.1 + 9574 0.66 0.529259
Target:  5'- gCCGC-CGGuCUgcACaCGGCAGCGaccGGCg -3'
miRNA:   3'- -GGCGcGUC-GAauUG-GCCGUCGCa--CUG- -5'
22442 3' -56.2 NC_005056.1 + 11883 0.68 0.395764
Target:  5'- gCCgGUGCAGUaaAGCUGGCAGCGg--- -3'
miRNA:   3'- -GG-CGCGUCGaaUUGGCCGUCGCacug -5'
22442 3' -56.2 NC_005056.1 + 11939 0.73 0.180452
Target:  5'- gCCGCuGcCAGCUUuacugcACCGGCAGUgGUGAUa -3'
miRNA:   3'- -GGCG-C-GUCGAAu-----UGGCCGUCG-CACUG- -5'
22442 3' -56.2 NC_005056.1 + 17173 0.74 0.159868
Target:  5'- aCCGCGaUAGUUUucgAGCUuacgggucaguuuuGGCAGCGUGACg -3'
miRNA:   3'- -GGCGC-GUCGAA---UUGG--------------CCGUCGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 17732 0.82 0.040199
Target:  5'- aCCGCGCAGCguc-CCGGCuuggguuucaucAGCGUGACc -3'
miRNA:   3'- -GGCGCGUCGaauuGGCCG------------UCGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 18372 0.66 0.475541
Target:  5'- aCGCcaGCAGCgggAACUGGCuGCuGUGGg -3'
miRNA:   3'- gGCG--CGUCGaa-UUGGCCGuCG-CACUg -5'
22442 3' -56.2 NC_005056.1 + 18463 1.12 0.000219
Target:  5'- aCCGCGCAGCUUAACCGGCAGCGUGACg -3'
miRNA:   3'- -GGCGCGUCGAAUUGGCCGUCGCACUG- -5'
22442 3' -56.2 NC_005056.1 + 20163 0.66 0.475541
Target:  5'- aCUGCGCAGUuuguugaacgcaUUAAgCGGCAGCa---- -3'
miRNA:   3'- -GGCGCGUCG------------AAUUgGCCGUCGcacug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.