Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22444 | 5' | -50.3 | NC_005056.1 | + | 9729 | 0.66 | 0.836975 |
Target: 5'- gGGUUAUCACCGGaauaaAUCcccggcagaacgAAcGCCGUg -3' miRNA: 3'- gCCAAUAGUGGCCg----UAG------------UUaCGGUAg -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 13641 | 0.66 | 0.817333 |
Target: 5'- cCGaGUUAucuguauuUCGCUGGCuAUagaAAUGCCAUCc -3' miRNA: 3'- -GC-CAAU--------AGUGGCCG-UAg--UUACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 20723 | 0.66 | 0.817333 |
Target: 5'- uGGauggCACCGGCAUgAuuuacggcauguAUGUCAUCa -3' miRNA: 3'- gCCaauaGUGGCCGUAgU------------UACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 7623 | 0.66 | 0.79678 |
Target: 5'- aCGGUUAUCugugugguuGCCGGUgguGUCGgcguguAUGCCAc- -3' miRNA: 3'- -GCCAAUAG---------UGGCCG---UAGU------UACGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 16840 | 0.67 | 0.786194 |
Target: 5'- aCGGaau---UUGGCAUUGAUGCCGUCa -3' miRNA: 3'- -GCCaauaguGGCCGUAGUUACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 1614 | 0.67 | 0.786194 |
Target: 5'- uCGGUauugaUGcCACCGGCcUCGGUGUCGg- -3' miRNA: 3'- -GCCA-----AUaGUGGCCGuAGUUACGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 4286 | 0.67 | 0.786194 |
Target: 5'- uGG-UGUCACCGGC-UCcAUcGCCAg- -3' miRNA: 3'- gCCaAUAGUGGCCGuAGuUA-CGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 19113 | 0.67 | 0.775421 |
Target: 5'- aGGggGUCAauGGCGgguacggguagCAGUGCCGUUg -3' miRNA: 3'- gCCaaUAGUggCCGUa----------GUUACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 4324 | 0.67 | 0.742117 |
Target: 5'- cCGGUgg-CACCGaGCGUCA--GCCGa- -3' miRNA: 3'- -GCCAauaGUGGC-CGUAGUuaCGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 16779 | 0.68 | 0.719238 |
Target: 5'- ----cAUCGuugaCGGCAUCAAUGCCAa- -3' miRNA: 3'- gccaaUAGUg---GCCGUAGUUACGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 10706 | 0.68 | 0.695955 |
Target: 5'- aGGUcAUUACCGGCggCAcagGCCAg- -3' miRNA: 3'- gCCAaUAGUGGCCGuaGUua-CGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 5480 | 0.68 | 0.684198 |
Target: 5'- cCGGcaaUAUCGCCGGUAUCcaGAcGCCAc- -3' miRNA: 3'- -GCCa--AUAGUGGCCGUAG--UUaCGGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 16250 | 0.69 | 0.660523 |
Target: 5'- aGGUggcuguugCACUGGCAUCAGU-CUGUCa -3' miRNA: 3'- gCCAaua-----GUGGCCGUAGUUAcGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 19609 | 0.69 | 0.648632 |
Target: 5'- ----aAUCACUGGCGUCAA--CCAUCg -3' miRNA: 3'- gccaaUAGUGGCCGUAGUUacGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 21024 | 0.7 | 0.601019 |
Target: 5'- gGGaUAUUACCGGCAauaUCAGcGaCCGUCu -3' miRNA: 3'- gCCaAUAGUGGCCGU---AGUUaC-GGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 10184 | 0.7 | 0.589163 |
Target: 5'- aCGGUUcGUUGCUGGCGUCAAUGauugaCCAg- -3' miRNA: 3'- -GCCAA-UAGUGGCCGUAGUUAC-----GGUag -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 6922 | 0.71 | 0.54227 |
Target: 5'- uGGgUAUCGCCGGuUAUCAGgugauugagauUGCCAUUc -3' miRNA: 3'- gCCaAUAGUGGCC-GUAGUU-----------ACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 19639 | 0.74 | 0.380735 |
Target: 5'- uCGGUggcgCACUGGCGcugacuggcgucaUCGGUGCCAUUg -3' miRNA: 3'- -GCCAaua-GUGGCCGU-------------AGUUACGGUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 16520 | 0.74 | 0.353552 |
Target: 5'- aCGG-UGUUACCGGCAUCA--GCgCGUCc -3' miRNA: 3'- -GCCaAUAGUGGCCGUAGUuaCG-GUAG- -5' |
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22444 | 5' | -50.3 | NC_005056.1 | + | 4206 | 0.88 | 0.050317 |
Target: 5'- aCGGUgaauuuuuucgacacAUCACCGGCGUCGAUGCCGUUc -3' miRNA: 3'- -GCCAa--------------UAGUGGCCGUAGUUACGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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