miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22476 3' -40.9 NC_005066.1 + 67528 0.66 1
Target:  5'- ----cGGUUacUACCGGAGGCGuauUAGUu -3'
miRNA:   3'- aguaaCUAAa-AUGGCUUUCGCu--AUCG- -5'
22476 3' -40.9 NC_005066.1 + 148947 0.66 1
Target:  5'- ---gUGAUuaucuuucUUUGCUGAAAggugauuauaucauuGCGAUGGCa -3'
miRNA:   3'- aguaACUA--------AAAUGGCUUU---------------CGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 64769 0.66 1
Target:  5'- gCAUaUGAaucaGCCGAAcAGCGAUAuGCa -3'
miRNA:   3'- aGUA-ACUaaaaUGGCUU-UCGCUAU-CG- -5'
22476 3' -40.9 NC_005066.1 + 45645 0.66 1
Target:  5'- ----------cACCGccAGCGAUAGCa -3'
miRNA:   3'- aguaacuaaaaUGGCuuUCGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 158477 0.66 1
Target:  5'- ----------cACCGAAAGCaGUAGCa -3'
miRNA:   3'- aguaacuaaaaUGGCUUUCGcUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 116864 0.67 1
Target:  5'- cUCAUgaaaGAgcacugUUUGCCGAuGGUG-UAGCg -3'
miRNA:   3'- -AGUAa---CUa-----AAAUGGCUuUCGCuAUCG- -5'
22476 3' -40.9 NC_005066.1 + 86131 0.68 1
Target:  5'- aUCAUUGAUaUUACUGAauuuccuuauAAGCaGGUuGCa -3'
miRNA:   3'- -AGUAACUAaAAUGGCU----------UUCG-CUAuCG- -5'
22476 3' -40.9 NC_005066.1 + 104630 0.68 1
Target:  5'- --uUUGAaauucGCCGAAGGUGAaAGCa -3'
miRNA:   3'- aguAACUaaaa-UGGCUUUCGCUaUCG- -5'
22476 3' -40.9 NC_005066.1 + 147816 0.69 1
Target:  5'- aUCGUUGGUggUACUGGAacAGCgcaaguuguuGAUAGUg -3'
miRNA:   3'- -AGUAACUAaaAUGGCUU--UCG----------CUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 23319 0.69 1
Target:  5'- -uGUUGAUUugUUGCUGAAcGUGAuUAGCu -3'
miRNA:   3'- agUAACUAA--AAUGGCUUuCGCU-AUCG- -5'
22476 3' -40.9 NC_005066.1 + 146561 0.7 1
Target:  5'- cUCGcUGGUaUUGCUGAAauuguucaggcuGGCGGUAGUg -3'
miRNA:   3'- -AGUaACUAaAAUGGCUU------------UCGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 94073 0.7 1
Target:  5'- uUCGgcGAUggaaguagccaUACCGAAAGCGAUuucAGCc -3'
miRNA:   3'- -AGUaaCUAaa---------AUGGCUUUCGCUA---UCG- -5'
22476 3' -40.9 NC_005066.1 + 12105 0.68 1
Target:  5'- ---aUGAUUacACCGGAAGauGUAGCa -3'
miRNA:   3'- aguaACUAAaaUGGCUUUCgcUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 122538 0.67 1
Target:  5'- aCggUGAUgugUGgUGGGcuAGCGAUAGCg -3'
miRNA:   3'- aGuaACUAaa-AUgGCUU--UCGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 74975 0.68 1
Target:  5'- gUAUUGAUUUUcCCGAAAGgugGAUuGCu -3'
miRNA:   3'- aGUAACUAAAAuGGCUUUCg--CUAuCG- -5'
22476 3' -40.9 NC_005066.1 + 156824 0.67 1
Target:  5'- aUCGcUGGgugUACCGGAagaaguauuAGCGAaaUGGCa -3'
miRNA:   3'- -AGUaACUaaaAUGGCUU---------UCGCU--AUCG- -5'
22476 3' -40.9 NC_005066.1 + 117008 0.67 1
Target:  5'- cUCAUUGAUa--ACCuGAuuGCGGcUGGCu -3'
miRNA:   3'- -AGUAACUAaaaUGG-CUuuCGCU-AUCG- -5'
22476 3' -40.9 NC_005066.1 + 42579 0.67 1
Target:  5'- aUCGcgGGgaa-ACCGGAAGCGA-AGCc -3'
miRNA:   3'- -AGUaaCUaaaaUGGCUUUCGCUaUCG- -5'
22476 3' -40.9 NC_005066.1 + 135667 0.66 1
Target:  5'- cUCGUguuaaa-GCCGAAgaccuguuuuuAGCGGUGGCa -3'
miRNA:   3'- -AGUAacuaaaaUGGCUU-----------UCGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 148447 0.66 1
Target:  5'- ----cGAUgUUACCGAuugcugGAGCGGUuGCc -3'
miRNA:   3'- aguaaCUAaAAUGGCU------UUCGCUAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.