miRNA: 3'- -GGGGGCGACCG-----ACC-UAg------CAGUUCAAA- -5'
miRNA: 3'- gGGGGCGa-----CCGa--CCUAGCAGU---UCAaa -5'
miRNA: 3'- gGGgGcGACCGACCua-GCAGUUCAAA- -5'
miRNA: 3'- -GGGGGCGACCGACCUAGCAGUUCAAA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22477 | 3' | -55.8 | NC_005066.1 | + | 145457 | 0.66 | 0.918105 |
|
Target: 5'- cCCUCUGCUGGUuuaguUGGcAUagagaaaGUCAAGUUUg -3' miRNA: 3'- -GGGGGCGACCG-----ACC-UAg------CAGUUCAAA- -5' |
|||||||
| 22477 | 3' | -55.8 | NC_005066.1 | + | 62331 | 0.66 | 0.906207 |
|
Target: 5'- gCCCUGCaauucaGGCggcGGAUCGUCAgcgAGUg- -3' miRNA: 3'- gGGGGCGa-----CCGa--CCUAGCAGU---UCAaa -5' |
|||||||
| 22477 | 3' | -55.8 | NC_005066.1 | + | 87031 | 0.7 | 0.702539 |
|
Target: 5'- aCCgCaCUGGCUGGuaaCGUCGAGUUUg -3' miRNA: 3'- gGGgGcGACCGACCua-GCAGUUCAAA- -5' |
|||||||
| 22477 | 3' | -55.8 | NC_005066.1 | + | 150251 | 1.06 | 0.004593 |
|
Target: 5'- uCCCCCGCUGGCUGGAUCGUCAAGUUUc -3' miRNA: 3'- -GGGGGCGACCGACCUAGCAGUUCAAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home