miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22484 3' -46.3 NC_005066.1 + 7311 0.68 0.999597
Target:  5'- cGCUCGGaucaacuGGucGUAAcugguACAGAUCACCc -3'
miRNA:   3'- -CGAGCU-------UCuuCGUUu----UGUCUAGUGGc -5'
22484 3' -46.3 NC_005066.1 + 27655 0.67 0.999874
Target:  5'- uGCUgGAAGAAGCAGAguuugaaACuGAccucgugccguauuUCGCCa -3'
miRNA:   3'- -CGAgCUUCUUCGUUU-------UGuCU--------------AGUGGc -5'
22484 3' -46.3 NC_005066.1 + 47522 0.79 0.823504
Target:  5'- ---aGAAGAaaaGGCAAAACGGAUCAUCGa -3'
miRNA:   3'- cgagCUUCU---UCGUUUUGUCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 50817 0.66 0.999951
Target:  5'- cGCUCGAAcuugauGAAGCAuacAAACaAGGUCGagaCGa -3'
miRNA:   3'- -CGAGCUU------CUUCGU---UUUG-UCUAGUg--GC- -5'
22484 3' -46.3 NC_005066.1 + 53062 0.67 0.999887
Target:  5'- cGCgcgUGAAGAGGCAaagaaAAACGGuauGCCGg -3'
miRNA:   3'- -CGa--GCUUCUUCGU-----UUUGUCuagUGGC- -5'
22484 3' -46.3 NC_005066.1 + 59325 0.66 0.999951
Target:  5'- cGCa-GAAGAAGUAAAACGGu---CCGg -3'
miRNA:   3'- -CGagCUUCUUCGUUUUGUCuaguGGC- -5'
22484 3' -46.3 NC_005066.1 + 61330 0.8 0.785817
Target:  5'- cGCUaaaGAGGAAGUAGAACuGAUCACgGa -3'
miRNA:   3'- -CGAg--CUUCUUCGUUUUGuCUAGUGgC- -5'
22484 3' -46.3 NC_005066.1 + 74700 0.75 0.947859
Target:  5'- gGCaaGAgacuauuaccGGAGGCAGAAUGGAUCACCa -3'
miRNA:   3'- -CGagCU----------UCUUCGUUUUGUCUAGUGGc -5'
22484 3' -46.3 NC_005066.1 + 80597 0.74 0.967437
Target:  5'- uGCUCGGaucGGcAGCGGGGC-GAUCACCa -3'
miRNA:   3'- -CGAGCU---UCuUCGUUUUGuCUAGUGGc -5'
22484 3' -46.3 NC_005066.1 + 90379 0.69 0.999382
Target:  5'- aGCgUCGAGauGGUAAAGCA-AUCACCGa -3'
miRNA:   3'- -CG-AGCUUcuUCGUUUUGUcUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 92348 1.12 0.01861
Target:  5'- uGCUCGAAGAAGCAAAACAGAUCACCGu -3'
miRNA:   3'- -CGAGCUUCUUCGUUUUGUCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 92577 0.67 0.999914
Target:  5'- aGUUCGAcGGAuuC-AAACAGGUCAUCGa -3'
miRNA:   3'- -CGAGCU-UCUucGuUUUGUCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 98044 0.68 0.999756
Target:  5'- aGCaaGAcGGGAGCAGGu--GAUCGCCGg -3'
miRNA:   3'- -CGagCU-UCUUCGUUUuguCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 105263 0.66 0.999951
Target:  5'- aUUUGAAGAAGUuguuAAGCAGAUgCACa- -3'
miRNA:   3'- cGAGCUUCUUCGu---UUUGUCUA-GUGgc -5'
22484 3' -46.3 NC_005066.1 + 109626 0.68 0.99981
Target:  5'- aCUCcaGAGGAAGCGAAgagaaaugauACucuguuugaagGGAUCACCGa -3'
miRNA:   3'- cGAG--CUUCUUCGUUU----------UG-----------UCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 113426 0.74 0.973571
Target:  5'- --gCGAGGAAGUAuucgaAAACaAGAUCACCGc -3'
miRNA:   3'- cgaGCUUCUUCGU-----UUUG-UCUAGUGGC- -5'
22484 3' -46.3 NC_005066.1 + 116389 0.66 0.999964
Target:  5'- -aUCGuc--AGCAuuaAAGCAGAUCACCu -3'
miRNA:   3'- cgAGCuucuUCGU---UUUGUCUAGUGGc -5'
22484 3' -46.3 NC_005066.1 + 124753 0.69 0.999382
Target:  5'- aUUCGAAGAAcUAAAACAGAUUGuuGa -3'
miRNA:   3'- cGAGCUUCUUcGUUUUGUCUAGUggC- -5'
22484 3' -46.3 NC_005066.1 + 129724 0.69 0.998563
Target:  5'- aUUCGAGGAAGCAuu-CAGGUCuauucuucgcaauGCCu -3'
miRNA:   3'- cGAGCUUCUUCGUuuuGUCUAG-------------UGGc -5'
22484 3' -46.3 NC_005066.1 + 130775 0.68 0.999689
Target:  5'- cGCUaGAGGAAgGUAAGACAGuaacauucuAUUACCGa -3'
miRNA:   3'- -CGAgCUUCUU-CGUUUUGUC---------UAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.