Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22484 | 3' | -46.3 | NC_005066.1 | + | 141656 | 0.68 | 0.999756 |
|
Target: 5'- --aCGGcaGGAAGCGAAuCAGGgcuUCACCGu -3' miRNA: 3'- cgaGCU--UCUUCGUUUuGUCU---AGUGGC- -5' |
|||||||
| 22484 | 3' | -46.3 | NC_005066.1 | + | 142168 | 0.67 | 0.999853 |
|
Target: 5'- uCUCGGAGAAGUAuacCAGAcuuuuaaugUCAUCGu -3' miRNA: 3'- cGAGCUUCUUCGUuuuGUCU---------AGUGGC- -5' |
|||||||
| 22484 | 3' | -46.3 | NC_005066.1 | + | 154121 | 0.66 | 0.999951 |
|
Target: 5'- --aCGAGGAuuccGGCAGAAC-GAUCACg- -3' miRNA: 3'- cgaGCUUCU----UCGUUUUGuCUAGUGgc -5' |
|||||||
| 22484 | 3' | -46.3 | NC_005066.1 | + | 161490 | 0.69 | 0.998506 |
|
Target: 5'- -aUUGAGGAaucccgcguuccucAGCAGAAUAGAUCGCa- -3' miRNA: 3'- cgAGCUUCU--------------UCGUUUUGUCUAGUGgc -5' |
|||||||
| 22484 | 3' | -46.3 | NC_005066.1 | + | 163366 | 0.66 | 0.999986 |
|
Target: 5'- uUUUGAGGAAGUAGucACGGGcuuuuuugcgcguUCACCGc -3' miRNA: 3'- cGAGCUUCUUCGUUu-UGUCU-------------AGUGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home