miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
225 3' -53.6 AC_000008.1 + 27784 0.66 0.646462
Target:  5'- aCAGCccguGCACCgCUGCCAGuacuGCGcACg -3'
miRNA:   3'- aGUCGu---CGUGGaGGCGGUCuu--UGU-UG- -5'
225 3' -53.6 AC_000008.1 + 19693 0.66 0.646462
Target:  5'- gCGGCAGUGCCgggUCGgCGGcgguGGCGACg -3'
miRNA:   3'- aGUCGUCGUGGa--GGCgGUCu---UUGUUG- -5'
225 3' -53.6 AC_000008.1 + 24338 0.66 0.634807
Target:  5'- aUCuGCAGCGCCagUgCGCCAuuaucuGCGACg -3'
miRNA:   3'- -AGuCGUCGUGG--AgGCGGUcuu---UGUUG- -5'
225 3' -53.6 AC_000008.1 + 966 0.66 0.631309
Target:  5'- -gAGCAGCACCUugcauuuuauaucgCCGCCcau--CAACa -3'
miRNA:   3'- agUCGUCGUGGA--------------GGCGGucuuuGUUG- -5'
225 3' -53.6 AC_000008.1 + 30490 0.66 0.623149
Target:  5'- cCGGCAGCGCUUCaGCaccagCAGGAcCAGCc -3'
miRNA:   3'- aGUCGUCGUGGAGgCG-----GUCUUuGUUG- -5'
225 3' -53.6 AC_000008.1 + 33303 0.66 0.6115
Target:  5'- gCAGCauaaGGCGCCuugUCCuCCGGgcACAGCa -3'
miRNA:   3'- aGUCG----UCGUGG---AGGcGGUCuuUGUUG- -5'
225 3' -53.6 AC_000008.1 + 22279 0.67 0.588273
Target:  5'- gCAGCGcCGCCUCUGCCugcucgcgcuGuuGCAACu -3'
miRNA:   3'- aGUCGUcGUGGAGGCGGu---------CuuUGUUG- -5'
225 3' -53.6 AC_000008.1 + 26701 0.67 0.588273
Target:  5'- gCGGCAGCGgCagCGgCAGcAACAGCa -3'
miRNA:   3'- aGUCGUCGUgGagGCgGUCuUUGUUG- -5'
225 3' -53.6 AC_000008.1 + 26493 0.67 0.576717
Target:  5'- -aAGCAGcCGCCgCCGUUAGcccaaGAGCAACa -3'
miRNA:   3'- agUCGUC-GUGGaGGCGGUC-----UUUGUUG- -5'
225 3' -53.6 AC_000008.1 + 18076 0.67 0.576717
Target:  5'- gCGGUGGCGCCUUCaGCUGGGgcucgcuguggAGCGGCa -3'
miRNA:   3'- aGUCGUCGUGGAGG-CGGUCU-----------UUGUUG- -5'
225 3' -53.6 AC_000008.1 + 34801 0.68 0.519885
Target:  5'- --cGCGGcCACUUccCCGCCAGGAACcauGACa -3'
miRNA:   3'- aguCGUC-GUGGA--GGCGGUCUUUG---UUG- -5'
225 3' -53.6 AC_000008.1 + 17194 0.68 0.519885
Target:  5'- cCAGUAGCACCaguauugccaCCGCCAcAGAgGGCa -3'
miRNA:   3'- aGUCGUCGUGGa---------GGCGGUcUUUgUUG- -5'
225 3' -53.6 AC_000008.1 + 8771 0.68 0.508769
Target:  5'- aCAGguGCuggcGCCggguguggCCGCUGGAGAUGACg -3'
miRNA:   3'- aGUCguCG----UGGa-------GGCGGUCUUUGUUG- -5'
225 3' -53.6 AC_000008.1 + 24612 0.68 0.497755
Target:  5'- uUCAGCuGCACCcuuggguaCCGCUcaGGAGAgGGCg -3'
miRNA:   3'- -AGUCGuCGUGGa-------GGCGG--UCUUUgUUG- -5'
225 3' -53.6 AC_000008.1 + 31664 0.69 0.486848
Target:  5'- gCAGUGGUgcuACCUCCaccCCAGAGACGGg -3'
miRNA:   3'- aGUCGUCG---UGGAGGc--GGUCUUUGUUg -5'
225 3' -53.6 AC_000008.1 + 30465 0.69 0.465385
Target:  5'- -gAGCAGCGCCU--GCUAGAAagacgcaggGCAGCg -3'
miRNA:   3'- agUCGUCGUGGAggCGGUCUU---------UGUUG- -5'
225 3' -53.6 AC_000008.1 + 23552 0.69 0.465385
Target:  5'- cUCuGCAGCGCCgcccgcaCCGCCGGGucCGuuGCg -3'
miRNA:   3'- -AGuCGUCGUGGa------GGCGGUCUuuGU--UG- -5'
225 3' -53.6 AC_000008.1 + 18611 0.69 0.464324
Target:  5'- gCAGCGaccgccuGCACCgcggcaUCCGCCAccgcuGAGGCAACc -3'
miRNA:   3'- aGUCGU-------CGUGG------AGGCGGU-----CUUUGUUG- -5'
225 3' -53.6 AC_000008.1 + 14266 0.69 0.434143
Target:  5'- cUCcGCGGUACCUgCgGCCuaccggggggAGAAACAGCa -3'
miRNA:   3'- -AGuCGUCGUGGA-GgCGG----------UCUUUGUUG- -5'
225 3' -53.6 AC_000008.1 + 4319 0.7 0.414004
Target:  5'- uUCAGUAGCAagCUgaUUGCCAGggGCAGg -3'
miRNA:   3'- -AGUCGUCGUg-GA--GGCGGUCuuUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.