Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
225 | 3' | -53.6 | AC_000008.1 | + | 8716 | 0.7 | 0.408075 |
Target: 5'- gCGGUugaucuccugaaucuGGCGCCUCUGCguGaAGACGACg -3' miRNA: 3'- aGUCG---------------UCGUGGAGGCGguC-UUUGUUG- -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 30379 | 0.71 | 0.357183 |
Target: 5'- cUCGuGCGGCGCCUCCuCCAaGGGCAAg -3' miRNA: 3'- -AGU-CGUCGUGGAGGcGGUcUUUGUUg -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 29399 | 0.72 | 0.330897 |
Target: 5'- -gGGCGGcCGCCUCUGCUGGAccAACGAg -3' miRNA: 3'- agUCGUC-GUGGAGGCGGUCU--UUGUUg -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 17104 | 0.72 | 0.290315 |
Target: 5'- cUCAGCAGCuCCUCUGgCGGcGACAu- -3' miRNA: 3'- -AGUCGUCGuGGAGGCgGUCuUUGUug -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 3588 | 0.73 | 0.260739 |
Target: 5'- gCAGCAGcCGCCgCCGCCAuGAGCAc- -3' miRNA: 3'- aGUCGUC-GUGGaGGCGGUcUUUGUug -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 30871 | 0.76 | 0.174707 |
Target: 5'- uUCAGCAGCACCUCCuuGCCcuccucccagcucuGGuauuGCAGCu -3' miRNA: 3'- -AGUCGUCGUGGAGG--CGG--------------UCuu--UGUUG- -5' |
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225 | 3' | -53.6 | AC_000008.1 | + | 26110 | 1.1 | 0.000625 |
Target: 5'- aUCAGCAGCACCUCCGCCAGAAACAACc -3' miRNA: 3'- -AGUCGUCGUGGAGGCGGUCUUUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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